FastQCFastQC Report
Fri 29 Sept 2023
SRR16929291.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR16929291.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2240699
Total Bases71.7 Mbp
Sequences flagged as poor quality0
Sequence length20-65
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCCTGTGGTCTAGTGGTTAGGATTCGGCG1908278.516404925427288No Hit
GCGCGTTACATCTGGAGTACGATAC1707537.620523774054436No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCG1248195.570538479287044No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCGG837153.736110918958771No Hit
GGTCCGTCCGGTCTTCTAATGAACTAGCGAACGAA620912.771054925271087No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCGGC417651.8639272834057585No Hit
GGTCCGTCCGGTCTTCTAATGAACTAGCGAACGA375051.6738080393662873No Hit
TCCCTGTGGTCTAGTGGTTAGGATT212670.94912346549001No Hit
TCCCTGTGGTCTAGTGGTTAGGATTC173080.7724375295387733No Hit
GGCGCGTTACATCTGGAGTACGATAC129740.5790157446404001No Hit
GCGCGTTACATCTGGAGTACGATA125600.5605393674027613No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCGGCGC97220.43388246257083163No Hit
AGAAGTCAGCAACTTGATTCCAGCAGTAGT78920.35221151970880515No Hit
CGCCGCGGCCCGGGTTCGATTCCCGGTCAGGGAACCA71630.31967702935557163No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGGCATTGGTGG68210.3044139351157831No Hit
GCATTGTGGTTCAGTGGTAGAATTCTCGC65270.291293029541228No Hit
ATGTGTGACTGAAAGGTATTTTCTGAGC58560.2613470171584849No Hit
CGCGTTACATCTGGAGTACGATAC57200.25527748260699007No Hit
GTATTTGCCCTTAAGCACGGCAGAAACTGCCTGCATCTCT46650.20819396090237913No Hit
TCCTGTGGTCTAGTGGTTAGGATTCGGCG44720.1995805773109195No Hit
GCGCGTTACATCTGGAGTAC40260.17967607429645838No Hit
CCCCACAACCGCGCTTGACTAGCTTGCTGTTT39510.17632890450703106No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGGCATGGGTGG33160.1479895336232131No Hit
TAGTCGGCACTGGCAATTTTTGACAGTCTCTACGGAGACTG31010.13839431356018814No Hit
TCCTGTGGTCTAGTGGTTAGGATTCG29220.13040573499608826No Hit
CGCAGAAGGTCCTGGGTTCGAGCCCCAGTGGAACCACCA28970.12929001173294583No Hit
AGTCGGCACTGGCAATTTTTGACAGTCTCTACGGAGACTG27600.12317584825092527No Hit
GCGCGTTACATCTGGAGTACGAT26240.1171063136994304No Hit
TCTAATGAACTAGCGAACGAA26080.11639225081101923No Hit
AGCAGAGTGCGCAGCGGAAGCGTGCTGGG26030.11616910615839075No Hit
GCATTGTGGTTCAGTGGTAGAATTCTCG25420.11344674139632321No Hit
CGTATACATAAAATCTAGACAAAAAAGGAAGGAAT24190.1079573829416624No Hit
CGCAGAAGGTCCTGGGTTCGAGCCCCAGTGGAACCAC23990.10706480433114844No Hit
GCGCGTTACATCTGGAGTACGA23420.10452095529118369No Hit
GGTCCGTCCGGTCTTCTAATGAACTAGCGAACG22740.10148618801543625No Hit
TAGTCGGCATTGGCAATTTTTGACAGTCTCTACGGAGACTG22440.10014732009966533No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)