FastQCFastQC Report
Fri 29 Sept 2023
SRR16929296.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR16929296.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1931022
Total Bases66.2 Mbp
Sequences flagged as poor quality0
Sequence length20-66
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCGTTACATCTGGAGTACGATAC25974313.451063737233444No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCGGCG1278796.6223481658935No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCG831024.303524247781745No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCGG592513.0683751919967768No Hit
GGTCCGTCCGGTCTTCTAATGAACTAGCGAACGAA568262.942794023061363No Hit
GGTCCGTCCGGTCTTCTAATGAACTAGCGAACGA396442.053006128361044No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCGGC316201.6374748708197007No Hit
GGCGCGTTACATCTGGAGTACGATAC304871.5788012772511135No Hit
TCCCTGTGGTCTAGTGGTTAGGATT140880.7295618589534454No Hit
GCGCGTTACATCTGGAGTACGATA140160.7258332634221671No Hit
TCCCTGTGGTCTAGTGGTTAGGATTC110290.5711483349231651No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCCCTGGTGGT92060.47674236751316146No Hit
CGCGTTACATCTGGAGTACGATAC71730.37146132980359625No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGGCATTGGTGG64140.33215571857803794No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCGGCGC57780.29921979138508004No Hit
ATGTGTGACTGAAAGGTATTTTCTGAGC41700.21594782451986563No Hit
CGCCGCGGCCCGGGTTCGATTCCCGGTCAGGGAACCA38860.20124058659093474No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCCTGGTGGTC36120.18705120915245918No Hit
AGTCGGCACTGGCAATTTTTGACAGTCTCTACGGAGACTG34570.17902437155040182No Hit
CCCCACAACCGCGCTTGACTAGCTTGCTGTTT33370.17281004566493804No Hit
TCCTGTGGTCTAGTGGTTAGGATTCGGCG29050.15043847247726852No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGGCATGGGTGG28370.14691702114217237No Hit
GGTCCGTCCGGTCTTCTAATGAACTAGCGAAC26260.13599016479356527No Hit
GGTCCGTCCGGTCTTCTAATGAACTAGCGAACG26030.13479908566551804No Hit
AGTCGGCATTGGCAATTTTTGACAGTCTCTACGGAGACTG23960.12407937351309307No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCATTGGTGGT22640.11724361503908294No Hit
GGCGCGTTACATCTGGAGTACGATA20360.10543639585670178No Hit
GCGCGCGGGTCGGGGGGCGGGGCGGACTGTCCCCGCCCCTTGCCTCTCGG19740.10222566081587886No Hit
GCGCGTTACATCTGGAGTACGA19520.10108636773687717No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)