FastQCFastQC Report
Wed 23 Aug 2023
SRR17007098_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR17007098_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36378915
Total Bases2.7 Gbp
Sequences flagged as poor quality0
Sequence length54-76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTACACGGAGTCGACCCAACGCGACTGTAGGCACCATCAATGCTACGA10287162.82778087251915No Hit
CTGTAGGCACCATCAATGCTACGATCTCGTATGCCGTCTTCTGCTTGAAA9222332.5350756062955697RNA PCR Primer, Index 22 (96% over 29bp)
GTTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAAT3219820.8850786231529995No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATG3114550.8561415314337989No Hit
ATGTACACGGAGTCGAGCTCAACCCGCAACGCGACTGTAGGCACCATCAA2167780.5958891297335284No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCGCTGTAGGCACCATCAATGCTACG1912410.5256918739879956No Hit
TCCGGTGAGCTCTCGCTGGCCCTTGAAAATCCGGCTGTAGGCACCATCAA1846890.5076814412964213No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAATGCTAC1769740.48647410182519185No Hit
TCGGGGCTACGCCTGTCTGAGCGTCGCTTCTGTAGGCACCATCAATGCTA1707970.46949448602301636No Hit
TCCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAATGCTA1553940.42715402589659424No Hit
TATTGATCATCGACACTTCGAACGCACTGTAGGCACCATCAATGCTACGA1541710.4237921884146352No Hit
TATTCGTAGACGACCTGCTTCTGGGTCGGCTGTAGGCACCATCAATGCTA1524410.4190366864982092No Hit
ACGGAGTCGAGCTCAACCCGCAACGCGACTGTAGGCACCATCAATGCTAC1495240.4110183055212065No Hit
TCTAAACCATTCGTAGACGACCTGCTTCTGTAGGCACCATCAATGCTACG1492730.41032834541656893No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTCTGTAGGCACCATCAAT1379250.37913445192084483No Hit
TGTTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAA1321680.36330935103479584No Hit
CTAAACCATTCGTAGACGACCTGCTTCTGTAGGCACCATCAATGCTACGA1231800.3386027318296876No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAATGCT1201560.3302902244335764No Hit
TGAGCTCTCGCTGGCCCTTGAAAATCCGGCTGTAGGCACCATCAATGCTA1193330.3280279249669761No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAATG1137550.3126948673428001No Hit
CCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATGCTAC1129580.31050403784719804No Hit
CCGGGGCTACGCCTGTCTGAGCGTCGCTTCTGTAGGCACCATCAATGCTA1127960.3100587249509778No Hit
TCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATGCTAC1098050.30183692944113366No Hit
AGAATCCCGCCCAGGCGGAACGATACCTGTAGGCACCATCAATGCTACGA1053220.28951385713400196No Hit
TCGTTTTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCAATGCT1034550.2843817634473156No Hit
AGAATCCCGCCCAGGCGGAACGATACTGTAGGCACCATCAATGCTACGAT967060.2658298082831772No Hit
TGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAATG920890.25313839074090033No Hit
ACCGCGGCGGTGCGCCGCGACCGGCTCCGGGACTGTAGGCACCATCAATG845560.23243134106665908No Hit
TCCGGTGAGCTCTCGCTGGCCCTTGAAAATCCTGTAGGCACCATCAATGC836100.22983093366033594No Hit
ACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAATGCTACGATCT827460.22745593154716132No Hit
TCGCTGAGAAGACGGTCGAACTTGACTATCTCTGTAGGCACCATCAATGC810850.22289009993838463No Hit
TCTAAACCATTCGTAGACGACCTGCTTCCTGTAGGCACCATCAATGCTAC777230.2136484829192954No Hit
TTGGCGCTAAACCATTCGTAGACGACCTGCTTCTGTAGGCACCATCAATG767250.21090513557097565No Hit
CTAAACCATTCGTAGACGACCTGCTTCCTGTAGGCACCATCAATGCTACG759310.20872255261048878No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAAT700090.1924438922931044No Hit
CCGGTGAGCTCTCGCTGGCCCTTGAAAATCCGGCTGTAGGCACCATCAAT680050.1869352068361577No Hit
TTTTTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCAATGCTAC668820.18384825385803835No Hit
TAGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCAAT658770.18108566459444983No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAATG636680.17501346590463185No Hit
ACCGCGGCGGTGCGCCGCGACCGGCTCCGGGCTGTAGGCACCATCAATGC631810.17367477837093273No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATGCTA601400.1653155406091688No Hit
TTGAGCTCTCGCTGGCCCTTGAAAATCCGGCTGTAGGCACCATCAATGCT574920.15803659894749472No Hit
ACGGAGTCGACCCAACGCGACTGTAGGCACCATCAATGCTACGATCTCGT569200.1564642595855319No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTTCTGTAGGCACCATCAATGC544420.14965262158038525No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATGCT539250.14823146869553422No Hit
AGCTCTCGCTGGCCCTTGAAAATCCGGCTGTAGGCACCATCAATGCTACG533210.14657116629234268No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCAATG518050.14240391721413354No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATG508900.13988872400400065No Hit
TAAACCATTCGTAGACGACCTGCTTCTGTAGGCACCATCAATGCTACGAT477830.13134806246970257No Hit
TGGGGCTACGCCTGTCTGAGCGTCGCTTCTGTAGGCACCATCAATGCTAC473640.1301962963986144No Hit
TTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAATGC460490.12658156517312294No Hit
ACTTCGAACGCACTTGCGGCCCCGGGTCTGTAGGCACCATCAATGCTACG447520.12301631315832261No Hit
ATTGATCATCGACACTTCGAACGCACTGTAGGCACCATCAATGCTACGAT440100.12097667013983236No Hit
TTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATGC432660.11893152943126532No Hit
TCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAATGCTAC421910.11597652101498904No Hit
ACGCGCGCTACACTGACTGGCTCAGCGCTGTAGGCACCATCAATGCTACG419090.11520134671416121No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAATGC407590.11204017492000516No Hit
TATGCTAAGACTTCACCAGTCAAAGCGACTGTAGGCACCATCAATGCTAC382990.10527801612554966No Hit
TCCGGTGAGCTCTCGCTGGCCCTTGAAAATCCGGGCTGTAGGCACCATCA380560.1046100467812193No Hit
CGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATGCTACG380330.10454682334533616No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCTTCTGTAGGCACCATCAATGCT377570.10378814211473872No Hit
AAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAATGCTACGATCTCGT371710.10217731892223833No Hit
CGGGGCTACGCCTGTCTGAGCGTCGCTTCTGTAGGCACCATCAATGCTAC369050.10144612614202485No Hit
TTCGCTTCTGGCGCCAAGCGCCCGGCCGCTGTAGGCACCATCAATGCTAC368390.10126470236949067No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTTCTGTAGGCACCATCAATGC366110.10063796570073627No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)