FastQCFastQC Report
Tue 18 Jul 2023
SRR17007099_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR17007099_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52865980
Total Bases2.5 Gbp
Sequences flagged as poor quality0
Sequence length35-50
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN5541321.0481825930399853No Hit
ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3933720.7440928930098335No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1815090.3433380030030655No Hit
GGGGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGAAAAAAAAAAAAAA1423600.2692847082376984No Hit
GGGCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAA1374050.25991195093706765No Hit
GGGGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAA1359460.257152142077003No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAA1127770.21332622605312526No Hit
GGGACACGGAGTCGACCCAACGCGAAAAAAAAAAAAAA1107040.2094049897495516No Hit
GGGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAA1098290.20774986106376916No Hit
ATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1056610.19986577379252213No Hit
GGGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGAAAAAAAAAAAAAA1032350.19527681128771282No Hit
GGGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAA947130.17915680367601244No Hit
CCGCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAA937810.17739385517869904No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAA866780.16395799340142753No Hit
GCGCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAA841980.1592668858120099No Hit
GGCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAA807600.15276364875861564No Hit
GGCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAA780610.1476582861038422No Hit
GGGACACGGAGTCGAGCTCAACCCGCAACGCGAAAAAAAAAAAAAA713270.13492041573806066No Hit
GGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGAAAAAAAAAAAAAA697910.13201495555364717No Hit
CGCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAA658390.12453944862083328No Hit
GGCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAA658140.12449215922981094No Hit
GGGCGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGAAAAAAAAAAAAA627750.11874366085713345No Hit
GGCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAA627450.11868691358790663No Hit
GCGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAA596160.11276817340754867No Hit
GGGGCGCCGCGACCGGCTCCGGGACGGCTGGGAAAAAAAAAAAAAA594510.11245606342680113No Hit
CGCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAA582200.11012753381286038No Hit
GGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAA548800.10380967117227374No Hit
CGCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAA542400.10259906276210144No Hit
GCGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAA541050.10234370005058073No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)