FastQCFastQC Report
Tue 18 Jul 2023
SRR17007101_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR17007101_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91454453
Total Bases4.5 Gbp
Sequences flagged as poor quality0
Sequence length35-50
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3121580.34132618998880243No Hit
GGGCGCCGCGACCGGCTCCGGGACGGCTGGGAAAAAAAAAAAAAAAGATC2164660.23669268460880738No Hit
GGGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG2075620.22695669067092886No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG2025520.22147855392016833No Hit
CGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1932540.21131174443741957No Hit
GGGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGAAAAAAAAAAAAAAAG1433770.1567742141544491No Hit
GCGCGCCGCGACCGGCTCCGGGACGGCTGGGAAAAAAAAAAAAAAAGATC1216450.13301156587749752No Hit
CCGCGCCGCGACCGGCTCCGGGACGGCTGGGAAAAAAAAAAAAAAAGATC1180330.12906205890269773No Hit
GGCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG1170240.12795877746926113No Hit
GGCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG1112020.12159276705749911No Hit
GCGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG1032220.11286711211317398No Hit
GGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGAAAAAAAAAAAAAAAGA992940.10857207795010265No Hit
CGCGCCGCGACCGGCTCCGGGACGGCTGGGAAAAAAAAAAAAAAAGATCG992060.10847585518881186No Hit
CGCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG983690.10756064551608001No Hit
GCGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG916730.10023896813422524No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)