FastQCFastQC Report
Tue 19 Sept 2023
SRR17195296_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR17195296_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences121433258
Total Bases4.7 Gbp
Sequences flagged as poor quality0
Sequence length15-40
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGATCATCGACACTTCGAACGCACTGTAGGCACCATCA12215011.005903176871035No Hit
TCGCCCGTCACGTTGAACGCACGTTCGCTGTAGGCACCA6694550.5512946049755166No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCACCTGTA5631150.46372386714684044No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAATCTGTAG5156400.4246283172275589No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGC4755620.3916241792672646No Hit
TGTAGGCACCATCAAT4076570.335704572795041No Hit
TCGCCCGTCACGTTGAACGCACGTTCTGTAGGCACCATC3803130.3131868536377407No Hit
TCGCCCGTCACGTTGAACGCACGTTCCTGTAGGCACCAT3520820.2899386920838441No Hit
GTCCGCCCGGAGGATTCAACCCGGCGGCGCGCCTGTAGG3330910.27429964861850287No Hit
CGCCCGTCACGTTGAACGCACGTTCGCTGTAGGCACCAT3177320.2616515485403513No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGCACCTGTAG3130240.25777452170475407No Hit
GTTTTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACC3044170.25068667761512253No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAATACTGTA3022350.24888980578944855No Hit
TAAACCATTCGTAGACGACCTGCTTCTGTAGGCACCATC2808230.23125707456519037No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCA2615610.21539486324248994No Hit
TGAAATACCACTACTCTCATCTGTAGGCACCATCAATAG2592380.21348187825117895No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGACTGTAGG2364860.1947456602045545No Hit
CGACTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCAT2252260.18547307690616355No Hit
AGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAATAGA2153970.1773789187143443No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCACTGTAG1905380.15690759116419326No Hit
GACGAAGCCGAGCGCACGGGGTCGGCGGCGACTGTAGGC1896980.15621585315614278No Hit
CGCCCGTCACGTTGAACGCACGTTCCTGTAGGCACCATC1844520.15189578459634182No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGCCTGTAGGCA1815360.14949446551125228No Hit
CGGTTGGCCCCGGATAGCCGGGTCCCCTGTAGGCACCAT1705570.14045328504650678No Hit
CATTGATCATCGACACTTCGAACGCACTGTAGGCACCAT1703060.14024658714172025No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCTGTAGGCACC1650600.13592651858191931No Hit
CGTCACGTTGAACGCACGTTCGCTGTAGGCACCATCAAT1644000.13538301014702248No Hit
CGCCCGTCACGTTGAACGCACGTTCTGTAGGCACCATCA1484920.12228280987075223No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGC1474360.12141319637491732No Hit
TCACGTTGAACGCACGTTCGCTGTAGGCACCATCAATAG1449470.11936351077725346No Hit
TACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATA1422100.11710959776768898No Hit
TGAAATACCACTACTCTCACTGTAGGCACCATCAATAGA1400240.11530943195150047No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGATCTGTAG1394810.11486227273915355No Hit
TAAAGCATCTGGCCTACACCCAGAAGATTCTGTAGGCAC1389870.11445546491060958No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCA1382590.11385595863696582No Hit
GAAATACCACTACTCTCATCTGTAGGCACCATCAATAGA1308310.10773901825149088No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCTGTAGGCACCA1264330.10411727568076944No Hit
TTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCA1236200.10180077685142895No Hit
CTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAAT1229720.10126715038807574No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)