FastQCFastQC Report
Tue 19 Sept 2023
SRR17195298_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR17195298_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences138329910
Total Bases5.4 Gbp
Sequences flagged as poor quality0
Sequence length15-40
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCTGGATACCGCAGCTAGGAATAATGGAATCTGTAG11538940.8341608839332No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGCCTGTAGGCA7314600.5287793507564633No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCACCTGTA6594660.4767342073742404No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGCACCTGTAG5944630.42974292399958913No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCACTGTAG5867970.42420110010915213No Hit
CGCCTGGATACCGCAGCTAGGAATAATGGAATCTGTAGG5241180.3788898583104695No Hit
GTCCGCCCGGAGGATTCAACCCGGCGGCGCGCCTGTAGG4482990.3240795862586768No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCA4290530.31016647086664045No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGC4281100.3094847672495413No Hit
GTTTTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACC4194860.30325039610016374No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGCTGTAGGCAC4080390.2949752515562253No Hit
TAAACCATTCGTAGACGACCTGCTTCTGTAGGCACCATC3902620.28212409015519496No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGCACTGTAGG3605990.2606804269589997No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCTGTAGGCACCA3588670.25942834778104024No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCA3422550.24741937589636254No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCTGTAGGCACCAT3280980.23718514672640212No Hit
GCCGCCGGTGAAATACCACTACTCTCACTGTAGGCACCA3125470.22594318177464298No Hit
CCCGTCGCCGCGCTCTCCCTCTCCCCCTGTAGGCACCAT2637250.19064929630909178No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAACTGTAGG2590210.1872487302276131No Hit
TGTACACGGAGTCGACCCAACGCGACTGTAGGCACCATC2073950.1499278066471669No Hit
CCCGTCGCCGCGCTCTCCCTCTCCCCTGTAGGCACCATC2029850.14673977594578064No Hit
CCGCCGGTGAAATACCACTACTCTCACTGTAGGCACCAT1873420.1354313033240606No Hit
TAAAGCATCTGGCCTACACCCAGAAGATTCTGTAGGCAC1829940.1322880930089523No Hit
TCGCCCGTCACGTTGAACGCACGTTCGCTGTAGGCACCA1757300.12703687871986616No Hit
TCGCCCGTCACGTTGAACGCACGTTCTGTAGGCACCATC1640600.11860052536721813No Hit
CGCCTGGATACCGCAGCTAGGAATAATGGAACTGTAGGC1604760.11600961787656769No Hit
GGCCGCCGGTGAAATACCACTACTCTCACTGTAGGCACC1602110.11581804687070209No Hit
TCGCCCGTCACGTTGAACGCACGTTCCTGTAGGCACCAT1586510.11469030811919129No Hit
GCCGCCGGTGAAATACCACTACTCTCATCTGTAGGCACC1549710.11203000132075558No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)