FastQCFastQC Report
Tue 19 Sept 2023
SRR17195299_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR17195299_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences113702019
Total Bases4.4 Gbp
Sequences flagged as poor quality0
Sequence length15-40
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCA25761782.2657275769219187No Hit
GTTTTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACC15504431.3636019954931495No Hit
TTTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCAT13845881.2177338733096728No Hit
TTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATC13172001.1584666759523417No Hit
TCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCAAT12431931.09337812198392No Hit
TTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCAA9149290.8046726065611903No Hit
CGCCCGTCACGTTGAACGCACGTTCGCTGTAGGCACCAT9113860.8015565669066967No Hit
TCGCCCGTCACGTTGAACGCACGTTCGCTGTAGGCACCA8598480.7562293155058223No Hit
CGACTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCAT6650210.584880555199288No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGC5422730.47692468855808096No Hit
TGTAGGCACCATCAAT4739030.41679383019575056No Hit
CACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCAATA4020830.3536287249217624No Hit
CGACTGCATAATTTGTGGTAGTGGGGGCTGTAGGCACCA3050970.2683303275379833No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAATCTGTAG2801170.24636062091386432No Hit
TGTACACGGAGTCGACCCAACGCGACTGTAGGCACCATC2728060.2399306559367253No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGATCTGTAG2470310.21726175328513736No Hit
TCGCCCGTCACGTTGAACGCACGTTCCTGTAGGCACCAT2328240.20476681245211661No Hit
CCCCGAGTGTTACAGCCCTCCGGCTGTAGGCACCATCAA2248470.19775110589724884No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCACCTGTA2247740.1976869029915819No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGACTGTAGG2174060.19120680697851108No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGG2171410.19097374163602143No Hit
CATTGATCATCGACACTTCGAACGCACTGTAGGCACCAT2139950.18820686024933295No Hit
TAAAGCATCTGGCCTACACCCAGAAGATTCTGTAGGCAC1999590.17586231252410742No Hit
CGCCCGTCACGTTGAACGCACGTTCCTGTAGGCACCATC1985220.17459848272351258No Hit
GTCCGCCCGGAGGATTCAACCCGGCGGCGCGCCTGTAGG1918780.1687551388159607No Hit
TCGCCCGTCACGTTGAACGCACGTTCGTCTGTAGGCACC1910020.16798470394795717No Hit
TTGATCATCGACACTTCGAACGCACTGTAGGCACCATCA1903430.1674051188132376No Hit
CTGTAGGCACCATCAAT1899880.16709289920348733No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGCACCTGTAG1870910.16454501128955326No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCA1734770.1525716091285943No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGC1713230.1506771836654897No Hit
CCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCATCA1629130.14328065713591243No Hit
GCCCGTCACGTTGAACGCACGTTCGCTGTAGGCACCATC1615080.14204497107478803No Hit
TGTACACGGAGTCGAGCTCAACCCGCAACGCGACTGTAG1602290.14092010098782853No Hit
CGCCCGTCACGTTGAACGCACGTTCGTCTGTAGGCACCA1600310.14074596159985514No Hit
TGAAATACCACTACTCTCATCTGTAGGCACCATCAATAG1552540.13654462899203224No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCA1501000.1320117279535731No Hit
CAAAGCAAAGCACTGAAAATGCTTAGATGCTGTAGGCAC1442570.12687285702464088No Hit
TCGCCCGTCACGTTGAACGCACGTTCTGTAGGCACCATC1366070.12014474430748674No Hit
TCGCCCGTCACGTTGAACGCACGTTCGTGCTGTAGGCAC1339230.11778418815940286No Hit
GGCCGCCGGTGAAATACCACTACTCTCATCTGTAGGCAC1290630.1135098577273285No Hit
CCGCCCCTTGCCTCTCGGCGCCCCTGTAGGCACCATCAA1287690.11325128712094373No Hit
CGCCCGTCACGTTGAACGCACGTTCGTGCTGTAGGCACC1261710.11096636727268669No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAATACTGTA1240520.10910272402462791No Hit
GACGAAGCCGAGCGCACGGGGTCGGCGGCGACTGTAGGC1209720.10639388910059723No Hit
GGCCGCCGGTGAAATACCACTACTCTCACTGTAGGCACC1200530.10558563608268029No Hit
CTCGCCCGTCACGTTGAACGCACGTTCGCTGTAGGCACC1186250.10432972170881152No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCTGTAGGCACC1184890.10421011081606213No Hit
GACGAAGCCGAGCGCACGGGGTCGGCGGCGATCTGTAGG1139290.10019962794152318No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)