FastQCFastQC Report
Tue 19 Sept 2023
SRR17195300_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR17195300_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences152103303
Total Bases5.9 Gbp
Sequences flagged as poor quality0
Sequence length15-40
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACC15961821.0494065339264855No Hit
TTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCA11913130.7832262524897305No Hit
TTGATCATCGACACTTCGAACGCACTGTAGGCACCATCA11369300.7474722623216145No Hit
TCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCAAT10623930.6984680667979972No Hit
TGTAGGCACCATCAAT7821830.5142445854709677No Hit
TCGCCCGTCACGTTGAACGCACGTTCGCTGTAGGCACCA7133260.4689746941261361No Hit
TTTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCAT7048780.46342057410811127No Hit
TTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATC6158760.40490639443904775No Hit
CGCCCGTCACGTTGAACGCACGTTCGCTGTAGGCACCAT5981030.3932215725782102No Hit
TTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCAA5363450.35261890400894186No Hit
CACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCAATA5291820.3479096045665754No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGC4982920.3276010383548344No Hit
CATTGATCATCGACACTTCGAACGCACTGTAGGCACCAT3424500.22514303979315953No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCTGTAGGCACC3362860.2210905308216745No Hit
CCCCGAGTGTTACAGCCCTCCGGCTGTAGGCACCATCAA3089890.20314417498218298No Hit
TGAAATACCACTACTCTCATCTGTAGGCACCATCAATAG2672590.17570887333064686No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCA2672570.17570755843480929No Hit
CTGTAGGCACCATCAAT2521150.1657524820483353No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCTGTAGGCACCA2518830.16559995413117362No Hit
TGATCATCGACACTTCGAACGCACTGTAGGCACCATCAA2463710.16197610120274641No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGC2412150.1585862997334121No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCA2287530.15039318376932287No Hit
CGACTGCATAATTTGTGGTAGTGGGGGCTGTAGGCACCA2151970.14148081978206614No Hit
CGACTGCATAATTTGTGGTAGTGGGGCTGTAGGCACCAT2132500.14020076868416195No Hit
TCGCCCGTCACGTTGAACGCACGTTCGTCTGTAGGCACC2097730.13791482227049337No Hit
CCGCCCCTTGCCTCTCGGCGCCCCTGTAGGCACCATCAA1955670.12857511713601644No Hit
TCTGGCGCCAAGCGTCCGTCCCTGTAGGCACCATCAATA1907410.12540227347988625No Hit
CCCGCCCCTTGCCTCTCGGCCTGTAGGCACCATCAATAG1864960.12261140706457899No Hit
TTGATCATCGACACTTCGAACGCACCTGTAGGCACCATC1802540.11850761715542757No Hit
TCGCCCGTCACGTTGAACGCACGTTCCTGTAGGCACCAT1769570.11634001136714303No Hit
CGCCCGTCACGTTGAACGCACGTTCCTGTAGGCACCATC1703060.11196732525920229No Hit
TAAAGCATCTGGCCTACACCCAGAAGATTCTGTAGGCAC1697960.11163202682061414No Hit
CGACTGCATAATTTGTGGTAGTGGGGGACTGTAGGCACC1670200.10980695139802454No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)