FastQCFastQC Report
Tue 19 Sept 2023
SRR17195301_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR17195301_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences107902304
Total Bases4.2 Gbp
Sequences flagged as poor quality0
Sequence length15-40
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGATCATCGACACTTCGAACGCACTGTAGGCACCATCA24207112.2434284628435734No Hit
TGTAGGCACCATCAAT12244251.1347533413188287No Hit
TGTACACGGAGTCGACCCAACGCGACTGTAGGCACCATC4719540.43739010429286107No Hit
TGAAATACCACTACTCTCATCTGTAGGCACCATCAATAG4696350.43524093795068547No Hit
TGAAATACCACTACTCTCACTGTAGGCACCATCAATAGA4298490.3983686947036831No Hit
TAAACCATTCGTAGACGACCTGCTTCTGTAGGCACCATC4236260.3926014406513507No Hit
TCGCCCGTCACGTTGAACGCACGTTCGCTGTAGGCACCA4105240.38045897518555305No Hit
CTGTAGGCACCATCAAT3636390.33700763238568104No Hit
CATTGATCATCGACACTTCGAACGCACTGTAGGCACCAT3214650.29792227606187166No Hit
GAAATACCACTACTCTCATCTGTAGGCACCATCAATAGA2993110.27739074042385603No Hit
TCTATCTATTTACGATTTCTCCTGTAGGCACCATCAATA2709090.2510687816267575No Hit
TAAAGCATCTGGCCTACACCCAGAAGATTCTGTAGGCAC2597660.24074184736592835No Hit
GTTTTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACC2540530.235447243091306No Hit
TTGATCATCGACACTTCGAACGCACCTGTAGGCACCATC2432130.22540111840429283No Hit
GAAATACCACTACTCTCACTGTAGGCACCATCAATAGAT2431460.2253390251982015No Hit
TGATCATCGACACTTCGAACGCACTGTAGGCACCATCAA2406340.2230109933519121No Hit
TCGCCCGTCACGTTGAACGCACGTTCTGTAGGCACCATC2263500.2097730925189512No Hit
TCGCCCGTCACGTTGAACGCACGTTCCTGTAGGCACCAT2259710.20942184886061374No Hit
TGTACACGGAGTCGAGCTCAACCCGCAACGCGACTGTAG2093590.1940264408070471No Hit
ATTGATCATCGACACTTCGAACGCACTGTAGGCACCATC2087970.19350559928729602No Hit
TGTACACGGAGTCGACCCAACGCGCTGTAGGCACCATCA1820080.16867851125773922No Hit
TGCGTGCATTTATCAGACTGTAGGCACCATCAATAGATC1407150.1304096342558172No Hit
CAAAAAGTAAGTTTAGATTATAGCCAAACTGTAGGCACC1395860.12936331739496498No Hit
CATCGACACTTCGAACGCACTGTAGGCACCATCAATAGA1365700.12656819635658567No Hit
CGTCACGTTGAACGCACGTTCGCTGTAGGCACCATCAAT1345320.1246794507742856No Hit
CAAAAAGTAAGTTTAGATTATAGCCAACTGTAGGCACCA1338650.12406129900618247No Hit
TCAACCCGGCGGCGCGCCTGTAGGCACCATCAATAGATC1330980.1233504708110774No Hit
CGCCCGTCACGTTGAACGCACGTTCGCTGTAGGCACCAT1326920.12297420451744942No Hit
CGACCTCAGATCAGACGTGGCGACCCGCTGACTGTAGGC1311120.12150991697081834No Hit
TCACGTTGAACGCACGTTCGCTGTAGGCACCATCAATAG1296190.12012625791567898No Hit
AATACCACTACTCTCATCTGTAGGCACCATCAATAGATC1288530.11941635648484392No Hit
AAATACCACTACTCTCATCTGTAGGCACCATCAATAGAT1276820.11833111552465088No Hit
GGGAAATGTGGCGTACGGAAGACTGTAGGCACCATCAAT1150330.10660847427317215No Hit
GTCCGCCCGGAGGATTCAACCCGGCGGCGCGCCTGTAGG1142200.10585501492164616No Hit
GGGAAATGTGGCGTACGGAAGCTGTAGGCACCATCAATA1136520.10532861281627498No Hit
CGACCTCAGATCAGACGTGGCGACCCGCTGAACTGTAGG1101590.1020914252210963No Hit
CGCCCGTCACGTTGAACGCACGTTCCTGTAGGCACCATC1081870.10026384608061753No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)