FastQCFastQC Report
Fri 30 Jun 2023
SRR1722638.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1722638.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56122131
Total Bases2.8 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAGGTGCACAATCGACCGATCCTGCTGTAGGCACCATCAATAGATCGGA11068391.9721970286552377No Hit
AGAGGTGCACAATCGACCGATCCTGACTGTAGGCACCATCAATAGATCGG10402031.8534631195668603No Hit
ATATTAGCATGGAATAATAGAATCTGTAGGCACCATCAATAGATCGGAAG9870221.7587037099500016No Hit
AAGAGGTGCACAATCGACCGATCCTGCTGTAGGCACCATCAATAGATCGG7473661.3316778723174285No Hit
ATATATTAGCATGGAATAATAGAATCTGTAGGCACCATCAATAGATCGGA6965161.2410719044150338No Hit
AAGAGGTGCACAATCGACCGATCCTGACTGTAGGCACCATCAATAGATCG5128960.9138925961311056No Hit
TTTGCTCGAATATATTAGCATGGAATAATAGAATCTGTAGGCACCATCAA4719550.8409427646288057No Hit
TTGATGATTCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAATA4259540.7589768820431997No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAAT4054040.7223603109440018No Hit
AATATATTAGCATGGAATAATAGAATCTGTAGGCACCATCAATAGATCGG3774150.6724887192897219No Hit
TTGCTCGAATATATTAGCATGGAATAATAGAATCTGTAGGCACCATCAAT3735130.6655360253515676No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAA3647290.6498844457634725No Hit
TATTAGCATGGAATAATAGAATCTGTAGGCACCATCAATAGATCGGAAGA3339930.5951181718313583No Hit
TATATTAGCATGGAATAATAGAATCTGTAGGCACCATCAATAGATCGGAA3140800.5596366253448216No Hit
TTTTCTTTACTTATTCAATGAAGCGGAGCTGTAGGCACCATCAATAGATC3105100.553275498394742No Hit
ATAAATCATTTGTATACGACTTAGATCTGTAGGCACCATCAATAGATCGG2605750.46429990336610705No Hit
TTTCTTTACTTATTCAATGAAGCGGAGCTGTAGGCACCATCAATAGATCG2401090.4278330058422051No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCACTGTAGGCACCATCAATA2276530.4056385528197423No Hit
ATATATTAGCATGGAATAATAGAACTGTAGGCACCATCAATAGATCGGAA2195870.3912663259347725No Hit
TTGATGATTCATAATAACTTTTCGAATCGCACTGTAGGCACCATCAATAG2183270.38902122230533265No Hit
TCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAATAGATCGGAA2069610.36876896210516313No Hit
AGTTTCTTTACTTATTCAATGAAGCGGAGCTGTAGGCACCATCAATAGAT2003570.35700176816165446No Hit
ATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAATAGATCGGAAGA1927260.34340463657732456No Hit
TTTGCTCGAATATATTAGCATGGAATAATAGAACTGTAGGCACCATCAAT1874730.3340446926364931No Hit
TGAGGTGCACAATCGACCGATCCTGACTGTAGGCACCATCAATAGATCGG1717200.3059755517836627No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCACTGTAGGCACCATCAAT1700610.30301949867156686No Hit
AATACTGAATATCTAAATATTATTATTACTTCTGTAGGCACCATCAATAG1659040.2956124385226926No Hit
TTATATTAGCATGGAATAATAGAATCTGTAGGCACCATCAATAGATCGGA1650590.294106793628346No Hit
ACTATGCCGACTAGGGATCGGGTGGTGCTGTAGGCACCATCAATAGATCG1492080.26586303360433694No Hit
ATTCCAGGGGGCATGCCTGTTTGAGCGTCATTTCTGTAGGCACCATCAAT1449770.25832411816294004No Hit
ATATTAGCATGGAATAATAGAACTGTAGGCACCATCAATAGATCGGAAGA1408190.25091527618578846No Hit
ACTATGCCGACTAGGGATCGGGTGGTGTCTGTAGGCACCATCAATAGATC1400880.24961275971505784No Hit
TTGCTCGAATATATTAGCATGGAATAATAGAACTGTAGGCACCATCAATA1354130.24128271251852498No Hit
ATTCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAATAGATCGG1348840.24034012535981572No Hit
GAATATATTAGCATGGAATAATAGAATCTGTAGGCACCATCAATAGATCG1229350.21904905927396093No Hit
AAATGGCTTAGTGAGGCCTCAGGATCTGCTCTGTAGGCACCATCAATAGA1227090.21864636608328358No Hit
TGAATGGCTTAGTGAGGCCTCAGGATCTGCTCTGTAGGCACCATCAATAG1190370.212103492648916No Hit
AATATATTAGCATGGAATAATAGAACTGTAGGCACCATCAATAGATCGGA1181640.2105479565628041No Hit
GTTTCTTTACTTATTCAATGAAGCGGAGCTGTAGGCACCATCAATAGATC1051240.18731291582637874No Hit
ATATAAAGAATGGTACAGCAATTAATATACTGTAGGCACCATCAATAGAT1023330.18233983310434168No Hit
TCATAATAACTTTTCGAATCGCACTGTAGGCACCATCAATAGATCGGAAG1020760.18188190323706704No Hit
TGCTCGAATATATTAGCATGGAATAATAGAATCTGTAGGCACCATCAATA1013230.18054018654423512No Hit
ATTAGCATGGAATAATAGAATCTGTAGGCACCATCAATAGATCGGAAGAG995280.17734180478642197No Hit
AACTATGCCGACTAGGGATCGGGTGGTGTCTGTAGGCACCATCAATAGAT988580.1761479798406087No Hit
ATATTAGCATGGAATAATAGAATACTGTAGGCACCATCAATAGATCGGAA924640.16475496983534No Hit
AATACTGAATATCTAAATATTATTATTACTCTGTAGGCACCATCAATAGA920240.16397096539331338No Hit
CATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAATAGATCGGAAG913280.16273081291228944No Hit
TATATTAGCATGGAATAATAGAACTGTAGGCACCATCAATAGATCGGAAG910860.16229961046917482No Hit
TCGAATATATTAGCATGGAATAATAGAATCTGTAGGCACCATCAATAGAT883180.15736750979751643No Hit
TTTTCTTTACTTATTCAATGAAGCGGACTGTAGGCACCATCAATAGATCG882400.15722852719188443No Hit
AGAGGTGCACAATCGACCGATCCTGCTGTAGGCACCATCAATAAATCGGA850060.15146609454298876No Hit
ATATAGATGGATACGAATAAGGCGTCCTGTAGGCACCATCAATAGATCGG846210.15078009065621548No Hit
TTCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAATAGATCGGA838030.1493225551253569No Hit
TGAGGTGCACAATCGACCGATCCTGCTGTAGGCACCATCAATAGATCGGA828080.1475496359894103No Hit
ACGCGAAACTCAGGTGCTGCAATCTCTGTAGGCACCATCAATAGATCGGA824650.146938468890285No Hit
TTCTTTACTTATTCAATGAAGCGGAGCTGTAGGCACCATCAATAGATCGG810860.1444813276958425No Hit
TTGTTAATAGATAATATACGGATCTTAATACTGTAGGCACCATCAATAGA761780.13573611451069098No Hit
AACTATGCCGACTAGGGATCGGGTGGTGCTGTAGGCACCATCAATAGATC708740.1262852973277155No Hit
TCTTTACTTATTCAATGAAGCGGAGCTGTAGGCACCATCAATAGATCGGA675020.12027697237654786No Hit
TGTTAATAGATAATATACGGATCTTAATACTGTAGGCACCATCAATAGAT665430.11856819905858527No Hit
TGATGATTCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAATAG636130.11334744220599892No Hit
AGTTTCTTTACTTATTCAATGAAGCGGACTGTAGGCACCATCAATAGATC629960.11224805415888431No Hit
TTTCCAGGGGGCATGCCTGTTTGAGCGTCATTTCTGTAGGCACCATCAAT625580.11146761337341236No Hit
TATAGATGGATACGAATAAGGCGTCCTGTAGGCACCATCAATAGATCGGA581020.10352778656961548No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)