FastQCFastQC Report
Fri 30 Jun 2023
SRR1722639.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1722639.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52751715
Total Bases2.6 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTGCTCGAATATATTAGCATGGAATAATAGAATCTGTAGGCACCATCAA12389572.3486572900994784No Hit
AGAGGTGCACAATCGACCGATCCTGCTGTAGGCACCATCAATAGATCGGA12023502.279262389857846No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAAT10404501.9723529367718187No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAA7771501.4732222450018924No Hit
TTTGCTCGAATATATTAGCATGGAATAATAGAACTGTAGGCACCATCAAT6220071.179121854142562No Hit
AGAGGTGCACAATCGACCGATCCTGACTGTAGGCACCATCAATAGATCGG5603101.0621645192009397No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCACTGTAGGCACCATCAATA5145910.9754962468992714No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCACTGTAGGCACCATCAAT3563970.6756121578227362No Hit
TTGATGATTCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAATA3181410.6030912928612843No Hit
AAGAGGTGCACAATCGACCGATCCTGCTGTAGGCACCATCAATAGATCGG2848330.5399502177322576No Hit
TTTTCTTTACTTATTCAATGAAGCGGAGCTGTAGGCACCATCAATAGATC2799270.5306500461643759No Hit
TGAATGGCTTAGTGAGGCCTCAGGATCTGCTCTGTAGGCACCATCAATAG2497750.47349171491391323No Hit
TTTCTTTACTTATTCAATGAAGCGGAGCTGTAGGCACCATCAATAGATCG2032220.38524245135916435No Hit
AAATGGCTTAGTGAGGCCTCAGGATCTGCTCTGTAGGCACCATCAATAGA2015830.3821354433689976No Hit
AATACTGAATATCTAAATATTATTATTACTTCTGTAGGCACCATCAATAG1937450.36727715866678456No Hit
ATATATAAAGAATGGTACAGCAATTAATATACTGTAGGCACCATCAATAG1937320.3672525149182354No Hit
TGAGGTGCACAATCGACCGATCCTGACTGTAGGCACCATCAATAGATCGG1830790.3470579108186341No Hit
ACTATGCCGACTAGGGATCGGGTGGTGTCTGTAGGCACCATCAATAGATC1606870.3046100017790891No Hit
TGAGGTGCACAATCGACCGATCCTGCTGTAGGCACCATCAATAGATCGGA1571900.2979808334193495No Hit
TTGATGATTCATAATAACTTTTCGAATCGCACTGTAGGCACCATCAATAG1436670.272345647909267No Hit
ATTCCAGGGGGCATGCCTGTTTGAGCGTCATTTCTGTAGGCACCATCAAT1405100.26636100835773774No Hit
TGTTAATAGATAATATACGGATCTTAATACTGTAGGCACCATCAATAGAT1345560.255074171522196No Hit
AAGAGGTGCACAATCGACCGATCCTGACTGTAGGCACCATCAATAGATCG1257200.23832400520058922No Hit
TTGCTCGAATATATTAGCATGGAATAATAGAATCTGTAGGCACCATCAAT1233720.23387296507800742No Hit
TTGTTAATAGATAATATACGGATCTTAATACTGTAGGCACCATCAATAGA1211770.22971196291912024No Hit
TTTCCAGGGGGCATGCCTGTTTGAGCGTCATTTCTGTAGGCACCATCAAT1203900.22822006829540994No Hit
AGTTTCTTTACTTATTCAATGAAGCGGAGCTGTAGGCACCATCAATAGAT1201560.22777648082152402No Hit
AATACTGAATATCTAAATATTATTATTACTCTGTAGGCACCATCAATAGA1185810.22479079590113799No Hit
TAGAGGTGCACAATCGACCGATCCTGCTGTAGGCACCATCAATAGATCGG1183420.22433773006242547No Hit
AACTATGCCGACTAGGGATCGGGTGGTGTCTGTAGGCACCATCAATAGAT1163020.22047055721316358No Hit
TTTTCTTTACTTATTCAATGAAGCGGACTGTAGGCACCATCAATAGATCG1131380.21447264795087703No Hit
TGTACAACGGGGTATTGTAAGCAGTAGAGTCTGTAGGCACCATCAATAGA1095360.2076444339297784No Hit
AGAGGTGCACAATCGACCGATCCTGCTGTAGGCACCATCAATAAATCGGA1023010.19392924002565604No Hit
TGCTCGAATATATTAGCATGGAATAATAGAATCTGTAGGCACCATCAATA1019840.19332831169564818No Hit
TTTGTTAATAGATAATATACGGATCTTAATACTGTAGGCACCATCAATAG1002840.19010566765459663No Hit
ATATAGATGGATACGAATAAGGCGTCCTGTAGGCACCATCAATAGATCGG957270.18146708595161315No Hit
ATATTAGCATGGAATAATAGAATCTGTAGGCACCATCAATAGATCGGAAG947970.17970411009386142No Hit
AAATACTGAATATCTAAATATTATTATTACTTCTGTAGGCACCATCAATA892810.16924757801713178No Hit
TCAGGGAGGTAGTGACAATAAATAACGCTGTAGGCACCATCAATAGATCG859080.1628534731050924No Hit
TATTCCAGGGGGCATGCCTGTTTGAGCGTCATTTCTGTAGGCACCATCAA837070.1586810969084133No Hit
ATAAATCATTTGTATACGACTTAGATCTGTAGGCACCATCAATAGATCGG831640.15765174648824212No Hit
TTTCCAGGGGGCATGCCTGTTTGAGCGTCATTCTGTAGGCACCATCAATA823340.15607833792702286No Hit
TTTTTAAAACCTAAAGGTAAACCTTTATCTGTAGGCACCATCAATAGATC769760.14592132217881448No Hit
AATATATTAGCATGGAATAATAGAATCTGTAGGCACCATCAATAGATCGG748180.14183045991964432No Hit
AAATATAGATGGATACGAATAAGGCGTCCTGTAGGCACCATCAATAGATC724420.13732634095403343No Hit
ATATATAAAGAATGGTACAGCAATTAATATATCTGTAGGCACCATCAATA723470.1371462520223276No Hit
TGCTCGAATATATTAGCATGGAATAATAGAACTGTAGGCACCATCAATAG712750.13511409060349983No Hit
GAATGGCTTAGTGAGGCCTCAGGATCTGCTCTGTAGGCACCATCAATAGA673730.12771717469280383No Hit
TTGCTCGAATATATTAGCATGGAATAATAGAACTGTAGGCACCATCAATA629580.1193477785508964No Hit
CTTGCTCGAATATATTAGCATGGAATAATAGAATCTGTAGGCACCATCAA566170.1073273162777741No Hit
ACTATGCCGACTAGGGATCGGGTGGTGCTGTAGGCACCATCAATAGATCG556210.10543922600431095No Hit
AGTTTCTTTACTTATTCAATGAAGCGGACTGTAGGCACCATCAATAGATC550730.10440039721931316No Hit
TAAACTATGCCGACTAGGGATCGGGTGGTGTCTGTAGGCACCATCAATAG540390.10244027137316769No Hit
TTTTGCTCGAATATATTAGCATGGAATAATAGAATCTGTAGGCACCATCA536220.10164977574662738No Hit
TAGAGGTGCACAATCGACCGATCCTGACTGTAGGCACCATCAATAGATCG535790.10156826180911843No Hit
AAATACTGAATATCTAAATATTATTATTACTCTGTAGGCACCATCAATAG529640.1004024229354439No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)