FastQCFastQC Report
Fri 30 Jun 2023
SRR1722640.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1722640.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28762051
Total Bases1.4 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTGCTCGAATATATTAGCATGGAATAATAGAATCTGTAGGCACCATCAA5536171.9248175312671547No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAAT5465141.9001217959039152No Hit
TTTGCTCGAATATATTAGCATGGAATAATAGAACTGTAGGCACCATCAAT3773691.3120378654498597No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCACTGTAGGCACCATCAATA3631711.2626742091514962No Hit
AGAGGTGCACAATCGACCGATCCTGCTGTAGGCACCATCAATAGATCGGA2953341.0268182891407849No Hit
AGAGGTGCACAATCGACCGATCCTGACTGTAGGCACCATCAATAGATCGG2485160.8640413022005976No Hit
TTTCCAGGGGGCATGCCTGTTTGAGCGTCATTCTGTAGGCACCATCAATA1905520.6625118632881918No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAA1867690.6493591155929735No Hit
TTGATGATTCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAATA1823100.6338560487219774No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCACTGTAGGCACCATCAAT1198130.4165662594785052No Hit
ATAAATCATTTGTATACGACTTAGATCTGTAGGCACCATCAATAGATCGG1151520.4003608782975873No Hit
TTGATGATTCATAATAACTTTTCGAATCGCACTGTAGGCACCATCAATAG1117010.3883624293691712No Hit
TGAGGTGCACAATCGACCGATCCTGACTGTAGGCACCATCAATAGATCGG1111430.3864223730081002No Hit
ATTCCAGGGGGCATGCCTGTTTGAGCGTCATTCTGTAGGCACCATCAATA980960.3410605175548851No Hit
TGTACAACGGGGTATTGTAAGCAGTAGAGTCTGTAGGCACCATCAATAGA926470.3221154152045694No Hit
ACTATGCCGACTAGGGATCGGGTGGTGTCTGTAGGCACCATCAATAGATC891820.3100682910269507No Hit
ATATATAAAGAATGGTACAGCAATTAATATACTGTAGGCACCATCAATAG889920.30940769835920257No Hit
ATTCCAGGGGGCATGCCTGTTTGAGCGTCATTTCTGTAGGCACCATCAAT801730.27874576816514235No Hit
ATATTAGCATGGAATAATAGAATCTGTAGGCACCATCAATAGATCGGAAG797870.2774037220085591No Hit
TTTCCAGGGGGCATGCCTGTTTGAGCGTCATTTCTGTAGGCACCATCAAT756710.2630931987430243No Hit
TATTCCAGGGGGCATGCCTGTTTGAGCGTCATTCTGTAGGCACCATCAAT644140.2239548215807002No Hit
TGTTAATAGATAATATACGGATCTTAATACTGTAGGCACCATCAATAGAT630940.21936544094160743No Hit
TTTTCTTTACTTATTCAATGAAGCGGAGCTGTAGGCACCATCAATAGATC615780.2140946068136796No Hit
ATAATAACTTTTCGAATCGCATGGCCCTGTAGGCACCATCAATAGATCGG589040.2047976342160022No Hit
TGAGGTGCACAATCGACCGATCCTGCTGTAGGCACCATCAATAGATCGGA557140.19370663100486124No Hit
TTGCTCGAATATATTAGCATGGAATAATAGAATCTGTAGGCACCATCAAT552940.19224637352878624No Hit
TTGAGATTAAGCCTTTGTTGTCTGATTTGTCTGTAGGCACCATCAATAGA544000.18913811118685522No Hit
AACTATGCCGACTAGGGATCGGGTGGTGTCTGTAGGCACCATCAATAGAT521280.18123881360199243No Hit
ATATAGATGGATACGAATAAGGCGTCCTGTAGGCACCATCAATAGATCGG487360.16944549608092968No Hit
TATTCCAGGGGGCATGCCTGTTTGAGCGTCATTTCTGTAGGCACCATCAA487280.16941768165281398No Hit
TCAGGGAGGTAGTGACAATAAATAACGCTGTAGGCACCATCAATAGATCG485710.1688718235010431No Hit
TTGTGAAACTCCGTCGTGCTGGGGATAGAGCATCTGTAGGCACCATCAAT478960.16652498112877973No Hit
TTTGATGATTCATAATAACTTTTCGAATCCTGTAGGCACCATCAATAGAT464550.16151490726443674No Hit
AATACTGAATATCTAAATATTATTATTACTTCTGTAGGCACCATCAATAG463930.16129934544653995No Hit
AATACTGAATATCTAAATATTATTATTACTCTGTAGGCACCATCAATAGA453020.15750615281225946No Hit
AAATATAGATGGATACGAATAAGGCGTCCTGTAGGCACCATCAATAGATC448330.15587553196397574No Hit
TTGCAGTTAAAAAGCTCGTAGTTGAACTTTGCTGTAGGCACCATCAATAG422520.1469019020931435No Hit
CCCCACTAATAGGGAACGTGAGCTGGGTTTCTGTAGGCACCATCAATAGA416330.14474976071769013No Hit
TGAATGGCTTAGTGAGGCCTCAGGATCTGCTCTGTAGGCACCATCAATAG415780.1445585365243946No Hit
ACTATGCCGACTAGGGATCGGGTGGTGCTGTAGGCACCATCAATAGATCG407760.14177014010579428No Hit
TTGTTAATAGATAATATACGGATCTTAATACTGTAGGCACCATCAATAGA404770.14073057585496945No Hit
TTTCTTTACTTATTCAATGAAGCGGAGCTGTAGGCACCATCAATAGATCG401800.13969796521117356No Hit
TTTTTAAAACCTAAAGGTAAACCTTTATCTGTAGGCACCATCAATAGATC399510.13890177720636124No Hit
TCTGCTGAGATTAAGCCTTTGTTGTCTGATTTGTCTGTAGGCACCATCAA385660.13408640433882826No Hit
TTTTCTTTACTTATTCAATGAAGCGGACTGTAGGCACCATCAATAGATCG381030.1324766443116313No Hit
TTGCTCGAATATATTAGCATGGAATAATAGAACTGTAGGCACCATCAATA357010.1241253622698882No Hit
AATATATTAGCATGGAATAATAGAATCTGTAGGCACCATCAATAGATCGG338650.11774195101733184No Hit
TTAAGGCAAAAGATTGGAAATCTTTTGCTGTAGGCACCATCAATAGATCG322810.11223469425042046No Hit
ATCAGTTTTGGTGGCAGGATAAATCCACTGTAGGCACCATCAATAGATCG309690.10767312803944336No Hit
AAATGGCTTAGTGAGGCCTCAGGATCTGCTCTGTAGGCACCATCAATAGA308100.10712031628064354No Hit
TGCTCGAATATATTAGCATGGAATAATAGAATCTGTAGGCACCATCAATA306110.10642843238126516No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCCTGTAGGCACCATCAATAG301320.10476304349783679No Hit
TAGAGGTGCACAATCGACCGATCCTGCTGTAGGCACCATCAATAGATCGG298630.10382778335244591No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)