FastQCFastQC Report
Fri 30 Jun 2023
SRR1722641.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1722641.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61328980
Total Bases3.1 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTGATGATTCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAAT15529662.5321895130165215No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCACTGTAGGCACCATCAATA15515582.529893697889644No Hit
TTGATGATTCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAATA7470141.218044063344931No Hit
AGAGGTGCACAATCGACCGATCCTGACTGTAGGCACCATCAATAGATCGG7205301.1748605634726028No Hit
ATAAATCATTTGTATACGACTTAGATCTGTAGGCACCATCAATAGATCGG7096731.157157676517692No Hit
TTGATGATTCATAATAACTTTTCGAATCGCACTGTAGGCACCATCAATAG6791901.1074536051308859No Hit
TTTGCTCGAATATATTAGCATGGAATAATAGAACTGTAGGCACCATCAAT6431061.0486168203025714No Hit
AGAGGTGCACAATCGACCGATCCTGCTGTAGGCACCATCAATAGATCGGA5807800.9469911288268613No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAA4880910.795857032026295No Hit
ACTATGCCGACTAGGGATCGGGTGGTGCTGTAGGCACCATCAATAGATCG4841020.7893527660169793No Hit
TTGAGATTAAGCCTTTGTTGTCTGATTTGTCTGTAGGCACCATCAATAGA4554760.7426766269388468No Hit
TTTGCTCGAATATATTAGCATGGAATAATAGAATCTGTAGGCACCATCAA4452040.7259276120359412No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCACTGTAGGCACCATCAAT4359170.7107846893915405No Hit
ACTATGCCGACTAGGGATCGGGTGGTGTCTGTAGGCACCATCAATAGATC4082680.665701598167783No Hit
TGAGATTAAGCCTTTGTTGTCTGATTTGTCTGTAGGCACCATCAATAGAT3210880.5235502041612302No Hit
AACTATGCCGACTAGGGATCGGGTGGTGCTGTAGGCACCATCAATAGATC2972140.4846224411363111No Hit
AACTATGCCGACTAGGGATCGGGTGGTGTCTGTAGGCACCATCAATAGAT2750630.44850411665088835No Hit
TGAGGTGCACAATCGACCGATCCTGACTGTAGGCACCATCAATAGATCGG2644520.4312023451229745No Hit
TTGCAGTTAAAAAGCTCGTAGTTGAACTTTGCTGTAGGCACCATCAATAG2632030.42916578752818No Hit
TGTACAACGGGGTATTGTAAGCAGTAGAGTCTGTAGGCACCATCAATAGA2134760.3480834020066859No Hit
ATATTAGCATGGAATAATAGAATCTGTAGGCACCATCAATAGATCGGAAG1841480.300262616466147No Hit
TTTCCAGGGGGCATGCCTGTTTGAGCGTCATTCTGTAGGCACCATCAATA1769300.2884933028398646No Hit
ATTAAATCAGTTATCGTTTATTTGATACTGTAGGCACCATCAATAGATCG1716290.2798497545532308No Hit
TTGTGAAACTCCGTCGTGCTGGGGATAGAGCATCTGTAGGCACCATCAAT1660310.2707219327632711No Hit
ATATATTAGCATGGAATAATAGAACTGTAGGCACCATCAATAGATCGGAA1504210.2452690392046305No Hit
TAAACTATGCCGACTAGGGATCGGGTGGTGTCTGTAGGCACCATCAATAG1497090.2441080872370615No Hit
ATATATTAGCATGGAATAATAGAATCTGTAGGCACCATCAATAGATCGGA1453610.23701845359241258No Hit
TTTGCAGTTAAAAAGCTCGTAGTTGAACTTTGCTGTAGGCACCATCAATA1432090.2335095088814456No Hit
TAAACTATGCCGACTAGGGATCGGGTGGTGCTGTAGGCACCATCAATAGA1424630.23229311819632417No Hit
TCAGGGAGGTAGTGACAATAAATAACGCTGTAGGCACCATCAATAGATCG1386450.226067676325287No Hit
TCTGCTGAGATTAAGCCTTTGTTGTCTGATTTGTCTGTAGGCACCATCAA1293270.21087420661488254No Hit
ATATAGATGGATACGAATAAGGCGTCCTGTAGGCACCATCAATAGATCGG1283560.20929094206360516No Hit
TATAAATCATTTGTATACGACTTAGATCTGTAGGCACCATCAATAGATCG1282850.20917517297695148No Hit
TTATATTAGCATGGAATAATAGAATCTGTAGGCACCATCAATAGATCGGA1231100.200737074055365No Hit
TGAGGTGCACAATCGACCGATCCTGCTGTAGGCACCATCAATAGATCGGA1226180.1999348432013707No Hit
TTAACCTACTAAATAGTGGTGCTAGCATCTGTAGGCACCATCAATAGATC1210670.19740585935066912No Hit
AATATATTAGCATGGAATAATAGAACTGTAGGCACCATCAATAGATCGGA1131740.18453592412591896No Hit
TTGGGCCAGCATCAGTTTTGGTGGCAGGATACTGTAGGCACCATCAATAG1068780.17426997807561775No Hit
AAAACTATGCCGACTAGGGATCGGGTGGTGTCTGTAGGCACCATCAATAG1047800.1708490830925282No Hit
TTAAGGCAAAAGATTGGAAATCTTTTGCTGTAGGCACCATCAATAGATCG983880.16042660419266716No Hit
ATTCCAGGGGGCATGCCTGTTTGAGCGTCATTCTGTAGGCACCATCAATA957860.1561839117493883No Hit
GCCAAGGACGTTTTCATTAATCAAGAACGACTGTAGGCACCATCAATAGA950760.1550262208828518No Hit
TTTTTAAAACCTAAAGGTAAACCTTTATCTGTAGGCACCATCAATAGATC943220.15379678579360037No Hit
TTGCTCGAATATATTAGCATGGAATAATAGAACTGTAGGCACCATCAATA933730.15224939335368043No Hit
AATATATTAGCATGGAATAATAGAATCTGTAGGCACCATCAATAGATCGG905380.14762678264011567No Hit
AAAACTATGCCGACTAGGGATCGGGTGGTGCTGTAGGCACCATCAATAGA901220.14694847362535624No Hit
CCCCACTAATAGGGAACGTGAGCTGGGTTTCTGTAGGCACCATCAATAGA898130.14644463351583542No Hit
ATTAAGCCTTTGTTGTCTGATTTGTCTGTAGGCACCATCAATAGATCGGA850900.1387435434275933No Hit
ATTCCAGGGGGCATGCCTGTTTGAGCGTCATTTCTGTAGGCACCATCAAT827840.13498349393712403No Hit
AGCTGGGACTGAGGACTGCGACGCTGTAGGCACCATCAATAGATCGGAAG817210.13325021873835174No Hit
AAATATAGATGGATACGAATAAGGCGTCCTGTAGGCACCATCAATAGATC803070.13094462030837625No Hit
AATACTGAATATCTAAATATTATTATTACTCTGTAGGCACCATCAATAGA796590.12988802357384713No Hit
TCGAATCTTTGAACGCACATTGCGCCCCTCTGTAGGCACCATCAATAGAT794610.12956517457162992No Hit
ATATATAAAGAATGGTACAGCAATTAATATACTGTAGGCACCATCAATAG783890.12781722441821142No Hit
TCTATGCCGACTAGGGATCGGGTGGTGTCTGTAGGCACCATCAATAGATC772960.12603503270395172No Hit
TGCAGTTAAAAAGCTCGTAGTTGAACTTTGCTGTAGGCACCATCAATAGA759250.12379954794617487No Hit
AATACTGAATATCTAAATATTATTATTACTTCTGTAGGCACCATCAATAG757360.12349137389860389No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCCTGTAGGCACCATCAATAG755110.12312450003244796No Hit
ATATTAGCATGGAATAATAGAACTGTAGGCACCATCAATAGATCGGAAGA753650.12288643965707566No Hit
TGATGATTCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAATAG745580.12157058539046305No Hit
AAATGGCTTAGTGAGGCCTCAGGATCTGCTCTGTAGGCACCATCAATAGA740660.12076835453646872No Hit
TTGCAGTTAAAAAGCTCGTAGTTGAACTTTGGCTGTAGGCACCATCAATA727240.11858015574366311No Hit
TTGCTGAGATTAAGCCTTTGTTGTCTGATTTGTCTGTAGGCACCATCAAT724540.11813990710427599No Hit
ATCAGTTTTGGTGGCAGGATAAATCCACTGTAGGCACCATCAATAGATCG720020.11740289827093162No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGATACTGTAGGCACCATCAATAGA716690.11685992494902084No Hit
TAGAGGTGCACAATCGACCGATCCTGACTGTAGGCACCATCAATAGATCG694860.11330043317205014No Hit
ACGCGCGCTACACTGACGGAGCCAGCGCTGTAGGCACCATCAATAGATCG692460.11290910104815048No Hit
TTGCTCGAATATATTAGCATGGAATAATAGAATCTGTAGGCACCATCAAT691700.11278517920891558No Hit
AATACTGCCAGCTGGGACTGAGGACTGCGACGCTGTAGGCACCATCAATA688800.1123123195592035No Hit
TTTCCAGGGGGCATGCCTGTTTGAGCGTCATTTCTGTAGGCACCATCAAT667640.10886207466682146No Hit
TGTTAATAGATAATATACGGATCTTAATACTGTAGGCACCATCAATAGAT646360.10539226316824445No Hit
AGTTTTGGTGGCAGGATAAATCCACTGTAGGCACCATCAATAGATCGGAA641920.10466829873903005No Hit
TATAGATGGATACGAATAAGGCGTCCTGTAGGCACCATCAATAGATCGGA641630.10462101277405886No Hit
TTATATTAGCATGGAATAATAGAACTGTAGGCACCATCAATAGATCGGAA635170.10356767714056227No Hit
TGATGATTCATAATAACTTTTCGAATCGCACTGTAGGCACCATCAATAGA628550.10248825269880568No Hit
TCGCGCGCTACACTGACGGAGCCAGCGCTGTAGGCACCATCAATAGATCG615500.10036038427510127No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)