FastQCFastQC Report
Tue 19 Sept 2023
SRR17238150_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR17238150_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36437047
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length5-38
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC26220507.196110047007926No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC19893645.459728940163565No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG9722682.668350154720277No Hit
CGGTTGGCCCCGGATAGCCGGGTCCCCG5673261.5570032335496342No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC4819471.3226840254096333No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC4570061.2542344608771396No Hit
GAGGGCGCACCACCGGCCCGTCTCGC4239891.1636206413763444No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCG3674711.0085092790313113No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCG3436060.9430127529269866No Hit
AGCTATTAATGGTTCGTTTGT3386080.9292959443173318No Hit
AGAGCCACCTTACAAATAAGCGCTCTC2539520.6969609803999759No Hit
ACCTCTAGCATTACAAGTATTAGAGGC2322670.6374473760181498No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCG2033040.5579595953535971No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC1951120.5354769830826301No Hit
AGGTCGGTTTCTATCTATTTACGATTTCTC1896200.520404411477143No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGC1873790.5142540777247948No Hit
TTGGTGACTCTAGATAACCTCG1736930.4766934049293292No Hit
TTAAAGCATCTGGCCTACACCCAGAAGATT1609610.44175094650233315No Hit
CGAGGGCGCACCACCGGCCCGTCTCGC1389560.38135911507867254No Hit
GTCCGCCCGGAGGATTCAACCCGGCGGCGCGC1375520.377505893932623No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC1373120.376847223651247No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGCG1266300.3475309072110042No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1222120.3354058851146746No Hit
CGAAGCCGAGCGCACGGGGTCGGCGGCGA1217770.3342120452296806No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGA1215280.33352867481275306No Hit
GTCGGTTTCTATCTATTTACGATTTCTC1152490.3162962135762538No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGA1136840.3120011344497813No Hit
CGGTTGGCCCCGGATAGCCGGGTCCCCGT1117770.30676745017234797No Hit
TGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC1093410.3000819468163817No Hit
AAGCTATTAATGGTTCGTTTGT1064060.29202695816705454No Hit
CGAGGGCGCACCACCGGCCCGTCTCG1051630.2886155950014281No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGG973540.267184110721157No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATT932410.255896148774076No Hit
GAGGGCGCACCACCGGCCCGTCTCG897140.24621644009735474No Hit
TAGAGCCACCTTACAAATAAGCGCTCTC747260.20508248102542448No Hit
TAGAGCCACCTTACAAATAAGCGCTCTCA735780.20193184151284269No Hit
TCGACTGCATAATTTGTGGTAGTGGGG717580.19693692521240816No Hit
TCGGTTTCTATCTATTTACGATTTCTC681270.1869717927470906No Hit
TAACCTAGACTTACAAGTCAAAGTA681250.18696630382807913No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCGT673580.18486130338718174No Hit
ATATTAAAGCATCTGGCCTACACCCAGAAGATT662840.1819137538780242No Hit
AGCTTTCGCCGAATCCCGGGGCCGAGGAAGCCAG649650.178293811789962No Hit
TAACCTAGACTTACAAGTCAAAGTAA632070.17346905197888293No Hit
AGCTTTCGCCGAATCCCGGGGCCGAGGAAGCCAGA625550.17167966438114482No Hit
CGGTTGGCCCCGGATAGCCGGGTCCC612160.168004833102968No Hit
TCGCCGAGGGCGCACCACCGGCCCGTCTCGC597950.164104956145321No Hit
GCCGAGGGCGCACCACCGGCCCGTCTCGC594530.16316635099436022No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCC592170.16251865855100717No Hit
GGGAGAGCGACGCTCAGAC575770.15801774496160462No Hit
TTGGTGACTCTAGATAACCTC562160.15428253557430163No Hit
GACGAAGCCGAGCGCACGGGGTCGGCGGCGA557400.15297617284957257No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC538700.14784403357385134No Hit
TAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC537770.14758879883981815No Hit
GGGAGAGCGACGCTCAGACA511880.14048339317947472No Hit
AGGGCGCACCACCGGCCCGTCTCGC509380.13979727830304142No Hit
AGTGTGCTTGGAATAATA501520.13764013313153506No Hit
TCACCTCTAGCATTACAAGTATTAGAGGC495050.13586446783132564No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTC488860.13416564739727674No Hit
AGAGCCACCTTACAAATAAGCGCTCTCA480050.1317477785727257No Hit
TGAGTCTTAAACCAATTTTTTGAGGCCTT467750.1283720933806738No Hit
GAAGCCGAGCGCACGGGGTCGGCGGCGA466000.12789181296717048No Hit
GGGAGAGCGACGCTCAGACAG457020.12542728833102199No Hit
TCGCCGAGGGCGCACCACCGGCCCGTCTCG448070.12297099707339071No Hit
CACCTCTAGCATTACAAGTATTAGAGGC419940.11525083248376303No Hit
CCGAGGGCGCACCACCGGCCCGTCTCGC404880.11111767646812873No Hit
TCAAAAAGTAAGTTTAGATTATA403150.11064288497363685No Hit
GGTCGGTTTCTATCTATTTACGATTTCTC402650.11050566199835019No Hit
TCCGCCCGGAGGATTCAACCCGGCGGCGCGC401560.11020651591222526No Hit
CCTCTAGCATTACAAGTATTAGAGGC397980.10922399940917277No Hit
GGCCCGAGGTGGGATCCCGAGGCCT396560.10883428615935864No Hit
AAACATCACCTCTAGCATTACAAGTATTAGAGGC395300.10848848426163625No Hit
ACCGTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCG394270.10820580493254572No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG382770.10504967650095244No Hit
TCACCTCTAGCATTACAAGTATTAGAGGCA382640.1050139985273779No Hit
GTCGCGGCGTGGGAAATGTGGCGTACG378290.10382015864238395No Hit
GCCGAGGGCGCACCACCGGCCCGTCTCG377840.10369665796462595No Hit
TTAAAGCATCTGGCCTACACCCAGAAGAT373260.10243969551100011No Hit
TTTGGTGACTCTAGATAACCTCG371170.10186610347430185No Hit
GGTTGGCCCCGGATAGCCGGGTCCCCG366410.10055974074957282No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCG364410.10001084884842618No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)