FastQCFastQC Report
Tue 19 Sept 2023
SRR17238151_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR17238151_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57809637
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length5-38
%GC64

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC56735809.814246022683035No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC40179976.9503930633572395No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG16625122.875838850190324No Hit
CGGTTGGCCCCGGATAGCCGGGTCCCCG11851492.0500889842985868No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC11486021.9868694210966937No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC9433091.6317504294309961No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCG7640391.3216464237614916No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCG4927800.8524184298199279No Hit
GAGGGCGCACCACCGGCCCGTCTCGC4715630.8157169366069537No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGA3798100.6570011847678614No Hit
AGCTATTAATGGTTCGTTTGT3532780.611105722736159No Hit
GTCCGCCCGGAGGATTCAACCCGGCGGCGCGC3375230.5838524812048206No Hit
CGGTTGGCCCCGGATAGCCGGGTCCCCGT3269170.5655060591368184No Hit
CGAAGCCGAGCGCACGGGGTCGGCGGCGA3244300.5612040082521189No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC3074800.5318836373250363No Hit
AGAGCCACCTTACAAATAAGCGCTCTC2791590.4828935355535964No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGC2456660.4249568285647599No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC2241150.3876775770102137No Hit
GGCCCGAGGTGGGATCCCGAGGCCT2212430.382709547198852No Hit
ACCTCTAGCATTACAAGTATTAGAGGC2192790.37931218976517705No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCG2191920.3791616958259053No Hit
AGGTCGGTTTCTATCTATTTACGATTTCTC2119700.36666896905095603No Hit
GGCCCGAGGTGGGATCCCGAGGCCTCT2061330.3565720365965972No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1917230.33164539677009214No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGCG1906220.32974087002137725No Hit
TGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC1897640.32825668841338684No Hit
CGAGGGCGCACCACCGGCCCGTCTCGC1880700.32532638113607254No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGA1840250.31832927786763304No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGG1806910.3125620733442765No Hit
GCCGAGGGCGCACCACCGGCCCGTCTCGC1607480.27806436494316683No Hit
TTGGTGACTCTAGATAACCTCG1577910.27294930082332125No Hit
CGAGGGCGCACCACCGGCCCGTCTCG1517060.26242337415126826No Hit
CGGTTGGCCCCGGATAGCCGGGTCCC1482210.25639496750342855No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCGT1473530.2548934877414989No Hit
TTAAAGCATCTGGCCTACACCCAGAAGATT1413460.2445024866701723No Hit
GGGAGAGCGACGCTCAGAC1402120.24254087601345778No Hit
GAGGGCGCACCACCGGCCCGTCTCG1372920.23748981506318748No Hit
GACGAAGCCGAGCGCACGGGGTCGGCGGCGA1319030.22816783990530853No Hit
GGGAGAGCGACGCTCAGACA1252740.21670089365895862No Hit
GGCCCGAGGTGGGATCCCGAGGCCTC1175080.20326714730971238No Hit
GTCGGTTTCTATCTATTTACGATTTCTC1167280.20191789130244842No Hit
AAGCTATTAATGGTTCGTTTGT1161270.2008782722506976No Hit
GGTTGGCCCCGGATAGCCGGGTCCCCG1157810.2002797561243984No Hit
GAAGCCGAGCGCACGGGGTCGGCGGCGA1101730.19057895139524922No Hit
TAGAGCCACCTTACAAATAAGCGCTCTCA1095230.18945457138919589No Hit
AGGGCGCACCACCGGCCCGTCTCGC1087360.18809320667417442No Hit
TCCGCCCGGAGGATTCAACCCGGCGGCGCGC1080100.18683736069818255No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCG1033170.17871933705447762No Hit
GGGAGAGCGACGCTCAGACAG1025990.1774773296016372No Hit
TAGAGCCACCTTACAAATAAGCGCTCTC961720.16635980606486078No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC877880.15185703380216695No Hit
TAACCTAGACTTACAAGTCAAAGTAA866620.1499092616686038No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATT851940.14736989267031725No Hit
GGGCCCGAGGTGGGATCCCGAGGCCT845620.14627664934135462No Hit
GCCGAGGGCGCACCACCGGCCCGTCTCG843540.14591684773941757No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCC841120.14549823241408694No Hit
CACCTCTAGCATTACAAGTATTAGAGGC836720.14473711364075856No Hit
AGCTTTCGCCGAATCCCGGGGCCGAGGAAGCCAGA815550.1410750944518126No Hit
AGCTTTCGCCGAATCCCGGGGCCGAGGAAGCCAG800690.13850458877643532No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT793770.13730755652383703No Hit
TGAGTCTTAAACCAATTTTTTGAGGCCTT779310.13480624346421688No Hit
GGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCG752600.1301859065470347No Hit
CGAAGCCGAGCGCACGGGGTCGGCGGCG749940.1297257756522498No Hit
GGGAGAGCGACGCTCAGA744260.12874324050849859No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTC743100.12854258192280293No Hit
CCGAGGGCGCACCACCGGCCCGTCTCGC741610.12828483942910765No Hit
GGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGC723870.12521614692027905No Hit
TAACCTAGACTTACAAGTCAAAGTA720290.12459687300925278No Hit
CGAAGCCGAGCGCACGGGGTCGGCGGCGAT689050.11919292971862114No Hit
CTCGCTTCTGGCGCCAAGCGTCCG686000.11866533602347305No Hit
ATTCAACCCGGCGGCGCGC683650.11825882940589992No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGCAATCG681060.11781080721887252No Hit
CGGTTGGCCCCGGATAGCCGGGTCCCC679910.11761187844857078No Hit
AGAGCCACCTTACAAATAAGCGCTCTCA662130.11453626667816648No Hit
TCGACTGCATAATTTGTGGTAGTGGGG645380.11163882589333679No Hit
TTGGTGACTCTAGATAACCTC643580.1113274591224297No Hit
GGGGTGGGGGCCGGGCCGCCCCTCCCACGGCG641470.11096246807431086No Hit
TAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC628830.10877598141638566No Hit
GGGAGAGCGACGCTCAGACAGG628560.10872927640074959No Hit
CCTCTAGCATTACAAGTATTAGAGGC615940.10654624937361222No Hit
TCGCTTCTGGCGCCAAGCGTCCG587310.10159378790079585No Hit
GGGAGAGCGACCCCC583080.10086207598916422No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)