FastQCFastQC Report
Tue 19 Sept 2023
SRR17238152_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR17238152_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50072791
Total Bases1.4 Gbp
Sequences flagged as poor quality0
Sequence length5-38
%GC67

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC657859513.138063344621633No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC40583548.104908711799188No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG14931842.9820267058810446No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC14272222.8502944842838898No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCG9035901.8045528958032317No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC8834271.7642855178573928No Hit
CGGTTGGCCCCGGATAGCCGGGTCCCCG8013091.6002882683331954No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCG6585321.3151493792307283No Hit
GAGGGCGCACCACCGGCCCGTCTCGC5659091.1301726720206189No Hit
GTCCGCCCGGAGGATTCAACCCGGCGGCGCGC4015000.8018326759536931No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGA3114390.6219725199659831No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGC3037060.6065290029469298No Hit
CGAAGCCGAGCGCACGGGGTCGGCGGCGA3033460.6058100496135717No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC2966600.592457488539035No Hit
AGAGCCACCTTACAAATAAGCGCTCTC2889450.5770499191866497No Hit
AGCTATTAATGGTTCGTTTGT2674450.5341124284444221No Hit
CGGTTGGCCCCGGATAGCCGGGTCCCCGT2405860.48047251849812006No Hit
CGAGGGCGCACCACCGGCCCGTCTCGC2359900.47129388094224667No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGCG2353080.4699318637940514No Hit
GCCGAGGGCGCACCACCGGCCCGTCTCGC1926800.3847998007540662No Hit
CGAGGGCGCACCACCGGCCCGTCTCG1653270.3301733270669893No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC1643460.32821417923358814No Hit
TTGGTGACTCTAGATAACCTCG1610780.3216876806407695No Hit
ACCTCTAGCATTACAAGTATTAGAGGC1601190.31977246884440697No Hit
AGGTCGGTTTCTATCTATTTACGATTTCTC1583030.3161457486961332No Hit
GGCCCGAGGTGGGATCCCGAGGCCTCT1407590.28110875625047543No Hit
AGGGCGCACCACCGGCCCGTCTCGC1358970.27139889206495404No Hit
GAGGGCGCACCACCGGCCCGTCTCG1319870.2635902600276466No Hit
TGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC1310820.2617828912312877No Hit
GTCGGTTTCTATCTATTTACGATTTCTC1310260.26167105404609864No Hit
GGGAGAGCGACGCTCAGAC1302740.260169240416417No Hit
GGCCCGAGGTGGGATCCCGAGGCCT1248600.24935698111974627No Hit
TCCGCCCGGAGGATTCAACCCGGCGGCGCGC1217950.24323589232323797No Hit
GACGAAGCCGAGCGCACGGGGTCGGCGGCGA1198790.23940946291569806No Hit
GGGAGAGCGACGCTCAGACA1096400.21896123185943442No Hit
GAAGCCGAGCGCACGGGGTCGGCGGCGA1087750.21723374676678198No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCG1060500.2117916694517787No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCGT1037290.2071564175442108No Hit
AGCTTTCGCCGAATCCCGGGGCCGAGGAAGCCAG1008770.2014607094699395No Hit
TTAAAGCATCTGGCCTACACCCAGAAGATT995650.19884052398836727No Hit
GCCGAGGGCGCACCACCGGCCCGTCTCG980170.19574902465492686No Hit
TAGAGCCACCTTACAAATAAGCGCTCTCA962120.1921442725251724No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA958080.19133744711773706No Hit
CCGAGGGCGCACCACCGGCCCGTCTCGC931460.18602118663607148No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCG894140.1785680370802578No Hit
GGGAGAGCGACGCTCAGACAG885670.17687649965427332No Hit
CGGTTGGCCCCGGATAGCCGGGTCCC882800.1763033340801794No Hit
TAGAGCCACCTTACAAATAAGCGCTCTC876250.17499523843198594No Hit
AGCTTTCGCCGAATCCCGGGGCCGAGGAAGCCAGA868050.1733576225060033No Hit
CGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCCGAG865210.17279044820968736No Hit
ATTCAACCCGGCGGCGCGC850820.16991663196884713No Hit
AAGCTATTAATGGTTCGTTTGT827260.16521148182053602No Hit
CACCTCTAGCATTACAAGTATTAGAGGC818530.1634680199871423No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGA789100.1575905764869388No Hit
GGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCG787640.15729900096841015No Hit
TAACCTAGACTTACAAGTCAAAGTA779640.15570132689428076No Hit
TAACCTAGACTTACAAGTCAAAGTAA777360.15524598978315388No Hit
CGAAGCCGAGCGCACGGGGTCGGCGGCG769050.15358640583865196No Hit
GGGGTGGGGGCCGGGCCGCCCCTCCCACGGCG768490.15347456865346293No Hit
GGTTGGCCCCGGATAGCCGGGTCCCCG750040.149789932820002No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGCAATCG720770.14394444280128102No Hit
TGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGGAG718120.14341521326422568No Hit
GGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGC701500.14009604537522186No Hit
GGCCCGAGGTGGGATCCCGAGGCCTC683200.13644136593065084No Hit
CTCGCTTCTGGCGCCAAGCGTCCG679810.13576435154173852No Hit
GTCCGCCCGGAGGATTCAACCCGGCGGCGCG673760.13455611052317815No Hit
AGAGCCACCTTACAAATAAGCGCTCTCA669160.13363744793055377No Hit
GGGAGAGCGACGCTCAGA667200.13324601778239203No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC665090.1328246312453404No Hit
TCGACTGCATAATTTGTGGTAGTGGGG664140.13263490744903753No Hit
CCTCTAGCATTACAAGTATTAGAGGC647960.12940361163411082No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTC641390.12809152180073205No Hit
TGAGTCTTAAACCAATTTTTTGAGGCCTT636760.12716686793032966No Hit
GCTTTCGCCGAATCCCGGGGCCGAGGAAGCCAG635160.12684733311550378No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCC622340.12428706041171143No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT612610.12234388931905153No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGG608620.12154704937457951No Hit
CGTCGCGGCGTGGGAAATGTGGCGTACG606030.1210298023930801No Hit
TCGGTTTCTATCTATTTACGATTTCTC603030.12043067461528158No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCCA602240.1202729043004613No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCCG600920.12000928807822996No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATT561570.11215072872610597No Hit
CGAAGCCGAGCGCACGGGGTCGGCGGCGAT549100.10966035426305674No Hit
GTCGCGGCGTGGGAAATGTGGCGTACG541040.1080506976333714No Hit
CGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCC529840.10581395392959023No Hit
GGCCCGAGGTGGGATCCCGAGGCCTCTC525170.10488131168881719No Hit
GCTTTCGCCGAATCCCGGGGCCGAGGAAGCCAGA524330.1047135559110336No Hit
AGTCCGCCCGGAGGATTCAACCCGGC513560.10256268718873689No Hit
GGGAGAGCGACGCTCAGACAGG506950.10124260898498748No Hit
GGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGC506750.10120266713313424No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)