FastQCFastQC Report
Tue 19 Sept 2023
SRR17238153_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR17238153_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences88828811
Total Bases2.5 Gbp
Sequences flagged as poor quality0
Sequence length5-38
%GC63

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC79461248.945435507405362No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC46605875.246706499313607No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG33430623.763488402428352No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC24794942.791317335093003No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCG19447462.189318958687852No Hit
CGGTTGGCCCCGGATAGCCGGGTCCCCG14313861.611398355878027No Hit
GAGGGCGCACCACCGGCCCGTCTCGC11762451.3241706004597988No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCG11082611.2476368731311738No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC10523821.1847304811948907No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGC7018940.7901648036243556No Hit
AGCTATTAATGGTTCGTTTGT5735140.6456396224868979No Hit
AGAGCCACCTTACAAATAAGCGCTCTC5476810.6165578418020252No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC5098990.5740243444213162No Hit
CGAGGGCGCACCACCGGCCCGTCTCGC4550240.512248216403572No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCG4262890.4798994776593374No Hit
TGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC4050290.45596580145601634No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGCG3853780.43384347450063243No Hit
AGGTCGGTTTCTATCTATTTACGATTTCTC3711200.41779237594433183No Hit
ACCTCTAGCATTACAAGTATTAGAGGC3677640.41401432244770225No Hit
AGGGCGCACCACCGGCCCGTCTCGC3161020.3558552641214572No Hit
CGAGGGCGCACCACCGGCCCGTCTCG3150780.3547024849854176No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC3117110.3509120481191626No Hit
GCCGAGGGCGCACCACCGGCCCGTCTCGC3115580.3507398067052817No Hit
GTCCGCCCGGAGGATTCAACCCGGCGGCGCGC3070530.3456682539632327No Hit
TTAAAGCATCTGGCCTACACCCAGAAGATT2961720.33341884988193754No Hit
GTCGGTTTCTATCTATTTACGATTTCTC2899490.3264132399565722No Hit
TTGGTGACTCTAGATAACCTCG2502720.28174642571766495No Hit
GAGGGCGCACCACCGGCCCGTCTCG2449720.2757798930799603No Hit
CGAAGCCGAGCGCACGGGGTCGGCGGCGA2411810.2715121336026889No Hit
CGGTTGGCCCCGGATAGCCGGGTCCCCGT2208740.24865130751327968No Hit
GCCGAGGGCGCACCACCGGCCCGTCTCG2118330.23847330344205553No Hit
TCGCCGAGGGCGCACCACCGGCCCGTCTCGC2105180.23699292789137977No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGA2072210.23328129428637742No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTC2040740.22973852481263088No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGA1881700.21183442385601672No Hit
TCGCCGAGGGCGCACCACCGGCCCGTCTCG1683160.189483567443No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATT1631370.18365325187117498No Hit
AGCTTTCGCCGAATCCCGGGGCCGAGGAAGCCAG1625110.18294852556340083No Hit
AGCTTTCGCCGAATCCCGGGGCCGAGGAAGCCAGA1528560.17207930431490298No Hit
CCTCTAGCATTACAAGTATTAGAGGC1514540.1705009875680988No Hit
TAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC1503580.1692671536490565No Hit
TCGGTTTCTATCTATTTACGATTTCTC1496560.1684768695147794No Hit
CGGTTGGCCCCGGATAGCCGGGTCCC1490650.16781154483763155No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTC1429890.16097142176089693No Hit
TCGACTGCATAATTTGTGGTAGTGGGG1409900.15872102577169472No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCCAG1408280.15853865250993848No Hit
TAACCTAGACTTACAAGTCAAAGTA1402660.15790597489816677No Hit
TAGAGCCACCTTACAAATAAGCGCTCTC1314080.14793398506707467No Hit
GGGAGAGCGACGCTCAGAC1312410.14774598300094324No Hit
CCGAGGGCGCACCACCGGCCCGTCTCGC1299080.14624534375451678No Hit
GGTCGGTTTCTATCTATTTACGATTTCTC1298770.14621044516739057No Hit
AAGCTATTAATGGTTCGTTTGT1298400.14616879201501412No Hit
GGCCCGAGGTGGGATCCCGAGGCCT1289610.14517924820585518No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGG1222680.13764453066922172No Hit
TAGAGCCACCTTACAAATAAGCGCTCTCA1203800.13551909413714883No Hit
TAACCTAGACTTACAAGTCAAAGTAA1177400.13254708542704685No Hit
GGGAGAGCGACGCTCAGACA1167070.13138417444313197No Hit
TCCGCCCGGAGGATTCAACCCGGCGGCGCGC1125730.12673027898572234No Hit
GTCGCGGCGTGGGAAATGTGGCGTACG1090480.12276197190121119No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG1085420.12219233689844165No Hit
GACGAAGCCGAGCGCACGGGGTCGGCGGCGA1081070.12170263091779984No Hit
ATATTAAAGCATCTGGCCTACACCCAGAAGATT1071630.1206399126517634No Hit
TCACCTCTAGCATTACAAGTATTAGAGGC1039280.11699807622101348No Hit
CGTCGCGGCGTGGGAAATGTGGCGTACG1013340.1140778525111633No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC1009150.1136061587045221No Hit
AGAGCCACCTTACAAATAAGCGCTCTCA1004420.11307367381062886No Hit
CGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCCGAG984400.11081990053880153No Hit
CGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCC978230.11012530607890272No Hit
TGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGGAG967480.10891511313823621No Hit
GAAGCCGAGCGCACGGGGTCGGCGGCGA963640.10848282096222137No Hit
GCTTTCGCCGAATCCCGGGGCCGAGGAAGCCAG962220.10832296291796589No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCC959410.10800662411208004No Hit
GAGCCACCTTACAAATAAGCGCTCTC940730.1059037027975079No Hit
TCAAAAAGTAAGTTTAGATTATA934820.10523837812036008No Hit
TGAGTCTTAAACCAATTTTTTGAGGCCTT926730.10432763757245384No Hit
GGTTGGCCCCGGATAGCCGGGTCCCCG925790.1042218160502002No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA919670.10353285039467656No Hit
GGCCCGAGGTGGGATCCCGAGGCCTCT919070.10346530474217425No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGCAATCG916970.10322889495841614No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)