FastQCFastQC Report
Tue 19 Sept 2023
SRR17238155_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR17238155_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67815790
Total Bases1.9 Gbp
Sequences flagged as poor quality0
Sequence length5-38
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC52727037.7750373474967995No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC44179896.514690752699334No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG12772991.8834831828988499No Hit
CGGTTGGCCCCGGATAGCCGGGTCCCCG11270831.6619772474817445No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC11116171.639171349327347No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC10011271.4762446916861103No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCG5748370.8476447741742742No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCG5728050.8446484218498376No Hit
AGCTATTAATGGTTCGTTTGT4996100.7367163311081387No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGA4617380.6808709299117507No Hit
AGGTCGGTTTCTATCTATTTACGATTTCTC4266150.6290791569338056No Hit
GTCCGCCCGGAGGATTCAACCCGGCGGCGCGC4230990.6238945236795148No Hit
GAGGGCGCACCACCGGCCCGTCTCGC4209220.620684356843738No Hit
AGAGCCACCTTACAAATAAGCGCTCTC4052820.5976218812757325No Hit
CGAAGCCGAGCGCACGGGGTCGGCGGCGA3784760.5580942137516941No Hit
CGGTTGGCCCCGGATAGCCGGGTCCCCGT3729230.5499058552587827No Hit
ACCTCTAGCATTACAAGTATTAGAGGC3583750.5284536241485943No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGC3449200.50861311207906No Hit
TTGGTGACTCTAGATAACCTCG2989150.44077492867074175No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCG2618760.38615785497743227No Hit
AAGCTATTAATGGTTCGTTTGT2419840.3568254531872297No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC2360550.34808265154767054No Hit
GTCGGTTTCTATCTATTTACGATTTCTC2279650.3361532763977239No Hit
TTAAAGCATCTGGCCTACACCCAGAAGATT2237870.32999246930545234No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGCG2237250.3299010451695689No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCGT2119480.31253488310023375No Hit
CGAGGGCGCACCACCGGCCCGTCTCGC2067790.30491276441666465No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC2049850.30226736280739336No Hit
TGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC1964940.28974667993987835No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1963680.2895608825024379No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGA1882130.27753565946809733No Hit
GGCCCGAGGTGGGATCCCGAGGCCTCT1730980.25524733988942694No Hit
TCGACTGCATAATTTGTGGTAGTGGGG1698300.2504284031786697No Hit
GACGAAGCCGAGCGCACGGGGTCGGCGGCGA1692460.2495672468019616No Hit
CACCTCTAGCATTACAAGTATTAGAGGC1588280.23420504280787705No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGG1563810.23059673860615645No Hit
TAACCTAGACTTACAAGTCAAAGTAA1512790.2230734169726549No Hit
GAAGCCGAGCGCACGGGGTCGGCGGCGA1452030.21411385165608188No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCC1412770.2083246394386912No Hit
TGAGTCTTAAACCAATTTTTTGAGGCCTT1387890.20465587734066065No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATT1350110.19908490338312068No Hit
GGCCCGAGGTGGGATCCCGAGGCCT1340660.19769142260231726No Hit
TAGAGCCACCTTACAAATAAGCGCTCTCA1309290.19306565624318464No Hit
TAACCTAGACTTACAAGTCAAAGTA1297600.19134186890693156No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCG1280000.1887466031141125No Hit
CGAGGGCGCACCACCGGCCCGTCTCG1277660.18840155073029452No Hit
CGGTTGGCCCCGGATAGCCGGGTCCC1221300.18009080186192625No Hit
TAGAGCCACCTTACAAATAAGCGCTCTC1200230.17698385582472753No Hit
GGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCG1145660.16893705728415168No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT1144920.16882793815422634No Hit
CCTCTAGCATTACAAGTATTAGAGGC1126990.1661840111277919No Hit
TGAGTCTTAACCCAATTTTTTGAGGTCCT1120290.16519604062711649No Hit
AGCTTTCGCCGAATCCCGGGGCCGAGGAAGCCAG1041150.15352619205645174No Hit
CTCGACTGCATAATTTGTGGTAGTGGGG1005020.14819852426698857No Hit
TCGGTTTCTATCTATTTACGATTTCTC996640.14696282384972587No Hit
CACCTCTAGCATTACAAGTATTAGAGGCA995300.14676522974959078No Hit
GCCGAGGGCGCACCACCGGCCCGTCTCGC988900.1458214967340202No Hit
AGCTTTCGCCGAATCCCGGGGCCGAGGAAGCCAGA975540.14385145406401667No Hit
GGGGTGGGGGCCGGGCCGCCCCTCCCACGGCG970400.14309351848588656No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGCAATCG950270.14012518323534975No Hit
CGACTGCATAATTTGTGGTAGTGGGG945820.13946899387296086No Hit
CGAAGCCGAGCGCACGGGGTCGGCGGCGAT930220.1371686446475076No Hit
CTCGACTGCATAATTTGTGGTAGTGGGGG924850.13637679366413044No Hit
GGTCGGTTTCTATCTATTTACGATTTCTC919180.1355407051956484No Hit
ATATTAAAGCATCTGGCCTACACCCAGAAGATT897490.13234233502256626No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC885890.13063181893184464No Hit
CGAAGCCGAGCGCACGGGGTCGGCGGCG882610.13014815576136474No Hit
AGAGCCACCTTACAAATAAGCGCTCTCA876010.12917493108905756No Hit
GAGGGCGCACCACCGGCCCGTCTCG811990.1197346517676783No Hit
CGGTTGGCCCCGGATAGCCGGGTCCCC794050.11708925015840707No Hit
GGCCCGAGGTGGGATCCCGAGGCCTC778390.11478005343593282No Hit
GGTTGGCCCCGGATAGCCGGGTCCCCG756180.11150500495533562No Hit
GGCCCGAGGTGGGATCCCGAGGCCTCTC729600.10758556377504414No Hit
CGTCGCGGCGTGGGAAATGTGGCGTACG718690.10597679390006369No Hit
TCACCTCTAGCATTACAAGTATTAGAGGCA714260.10532355370334844No Hit
TCACCTCTAGCATTACAAGTATTAGAGGC711870.10497112840534631No Hit
GGGAGAGCGACGCTCAGACA711460.10491067050903632No Hit
TTGGTGACTCTAGATAACCTC708440.10446534649231397No Hit
TCCGCCCGGAGGATTCAACCCGGCGGCGCGC702890.10364695301787386No Hit
AACGATGCCGACTGGCGATGCGGCGGCGTT686250.1011932471773904No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)