FastQCFastQC Report
Tue 19 Sept 2023
SRR17238160_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR17238160_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56645280
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length5-38
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGC14556442.5697533845714946No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC8346101.473397253928306No Hit
GGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGC7959511.4051497318046624No Hit
CGTCCCCGCTCGGCGGGGTCCCCGCG5414810.9559154796304299No Hit
GGGAGAGATCC4875490.8607054285899902No Hit
CCGTCCCCGCTCGGCGGGGTCCCCGCG3351300.5916291701621035No Hit
TGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGAG3159680.5578011089361726No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC3065620.5411960184502574No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCGTCCG2993440.5284535622385484No Hit
GGGAGAAAGCCC2921880.5158205591004228No Hit
TCGCTTCTGGCGCCAAGCGTCCG2880000.5084271805170704No Hit
GGGAGAAAGCC2815310.4970069880491367No Hit
CGTCCCCGCTCGGCGGGGTCCCCGC2669400.47124844294175966No Hit
CTCGCTTCTGGCGCCAAGCGTCCG2644450.4668438394160996No Hit
TCGCTTCTGGCGCCAAGCGTCCGTCC2273980.4014420972056277No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGG2176060.3841555730680473No Hit
GGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGC2095120.36986665084893217No Hit
GGGAGAGCGACGCTCAGAC2011210.3550534130999088No Hit
CCGTCCCCGCTCGGCGGGGTCCCCGC1910910.33734673038953994No Hit
GGGAGAAAGCCCC1747770.3085464490598334No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC1696820.29955187793228316No Hit
CTCGACTGCATAATTTGTGGTAGTGGGGG1589930.28068181497205064No Hit
TGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCG1558750.2751773845940915No Hit
GCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCC1520200.26837187493821196Illumina Paired End PCR Primer 2 (100% over 38bp)
CCCTCCGCGCGCCGGGTTTCGCCCCCGCGGCGTC1383950.24431867933215265No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCC1369390.24174829747509413No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC1363830.24076675055715144No Hit
GGGAGAGCGACGCTCAGACA1338950.23637450463657342No Hit
CCGACGAAGCCGAGCGCACGGGGTCGGCGGCGA1307930.23089832021308745No Hit
ATGCGTGCATTTATCAGA1273390.22480072479119179No Hit
GGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACC1238740.2186837102755958No Hit
CCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT1218530.21511589315120339No Hit
CGCTTCTGGCGCCAAGCGTCCG1182150.20869346925286625No Hit
TGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGAC1166290.2058935890157132No Hit
GGGAGAGCGACGCTCAGA1135930.20053391915442909No Hit
TGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGAA1133640.20012964893103186No Hit
GGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCG1126850.19893096123807666No Hit
CTCGCTTCTGGCGCCAAGCGTCCGTCC1057560.18669869757903926No Hit
CTCGACTGCATAATTTGTGGTAGTGGGGGA1051160.18556885940011242No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCG998470.17626711351766644No Hit
GGGAGAGCGACGCTCAGACAGGCGTAGCCCCGGGAGGA991820.17509314103487528No Hit
GGGAGAGCGACCCC966060.1705455423646948No Hit
GGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCG947160.16720898899255154No Hit
GGGAGAGCGACCCCC918740.16219180132925462No Hit
AACGATGCCGACTGGCGATGCGGCGGCGTTA890700.15724169780783148No Hit
GGGAGAGCGACGCTC889590.15704574149867384No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCAG859530.15173903280202694No Hit
AACGATGCCGACTGGCGATGCGGCGGCGTT856620.15122530950504615No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCG848330.149761815988905No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCG846910.1495111331429556No Hit
GGGAGAGCCTC797730.1408290328867648No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG782840.13820039374860535No Hit
GGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGC779260.13756839051726816No Hit
ATGTACACTAGGGATAACAGGGTAATCAACGCGA772180.13631850703183038No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGA749380.13229345851940355No Hit
GGGAGAGCGACGCTCAGACAG713870.12602462199851425No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC708230.125028952103335No Hit
GGGAGAGCGACGCTCA703950.12427337282117769No Hit
GGGAGAAAGCCCCC702080.1239432482282725No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCC687750.12141346993076915No Hit
GGGAGAGCGACGCTCAGACAGG677030.11952099098106674No Hit
TCCCTGGTGGTCTAGTGGTTAGGATT672400.11870362367349936No Hit
CGGTTGGCCCCGGATAGCCGGGTCCCCG669820.1182481576576195No Hit
GGGGAGAGATCC642470.11341986481486188No Hit
TCGCTTCTGGCGCCAAGCGTCCGTC631680.11151502826007745No Hit
CGTCCCCGCTCGGCGGGGTCCCCG629400.11111252340883478No Hit
GGGTGGGGGCCGGGCCGCCCCTCCCACGGCGC606320.10703804447607991No Hit
GGGAGAGATCCTTCCGCAGGTTCACCTACGGAAACCTT577000.10186197331887141No Hit
CCTCCGCGCGCCGGGTTTCGCCCCCGCGGCGTC567810.10023959630881868No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)