FastQCFastQC Report
Tue 19 Sept 2023
SRR17658109.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR17658109.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences85097905
Total Bases2.5 Gbp
Sequences flagged as poor quality0
Sequence length15-89
%GC66

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT58108986.828485378106547No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT53744136.315564407842943No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC43729455.138722275242851No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC24968122.934046378697572No Hit
TCGCTTCTGGCGCCAAGCGTCCG21814272.5634320844913865No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT16292001.9145007153818887No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC15234431.7902238603876324No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC14884961.7491570444654307No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAC14075681.654057170972658No Hit
CTCGCTTCTGGCGCCAAGCGTCCG11453401.3459085743650212No Hit
CGCTTCTGGCGCCAAGCGTCCG9869131.159738303780804No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC9263091.0885215094308138No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATA9171361.077742160632509No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCG6861990.8063641519729541No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT6853550.8053723531736768No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCC6851240.8051009011326424No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCC6228710.7319463387494675No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC5771060.6781671064640193No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC5451190.6405786370416522No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCC5405750.635238905117582No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCG5091420.598301450546873No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG4763630.5597822884123881No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCG3911190.4596106096853971No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT2942950.3458310753948643No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT2868070.3370317988439316No Hit
TCGCTTCTGGCGCCAAGCGTCCGTCC2821750.3315886566185149No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAA2669700.31372100170973655No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT2507910.294708782783783No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCA2483720.29186617461381686No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAG2409200.2831092022770713No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT2396700.2816403059511277No Hit
CGGTTGGCCCCGGATAGCCGGGTCCCCG2386220.2804087832714566No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGG2373140.27887173015598915No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAAT2366570.2780996782470732No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG2239720.26319331833139725No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG2227570.26176555110258004No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGA2079640.24438204442283276No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGG2069850.2432316048203537No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT1998560.23485419529423196No Hit
CTCGCTTCTGGCGCCAAGCGTCCGTCC1976310.2322395598340523No Hit
CGGTTGGCCCCGGATAGCCGGGTCCC1953770.22959084597911078No Hit
TCTCGCTTCTGGCGCCAAGCGTCCG1923400.22602201546559814No Hit
CCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1797840.21126724565075955No Hit
TGGGGGTGGGGGCCGGGCCGC1796480.2111074297304969No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC1769100.20788995921814996No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1748230.2054374899123545No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC1746180.20519659091489972No Hit
TTCGGTTGGCCCCGGATAGCCGGGTCCCCG1742410.20475357178299514No Hit
TGGGGGTGGGGGCCGGGCCG1718670.201963843880763No Hit
CCCGGGGAGCCCGGCGGGTGCCGGCGCGGG1712080.2011894417377255No Hit
TCGTTTCCCGGTCAGGG1683930.19788148721170046No Hit
TCGCTTCTGGCGCCAAGCGTCC1641480.19289311528879588No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT1553830.18259321425127917No Hit
CCTCCCCTCTTCCCCGCGG1551930.18236994200973572No Hit
CTCGGTTGGCCCCGGATAGCCGGGT1529260.17970595163300435No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCA1496390.17584334185430298No Hit
GTCTAGCGGTTAGGATTCCTGG1452310.17066342585049538No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCCG1363140.16018490701974392No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGCAC1327940.15604849496588666No Hit
CCTCGGTTGGCCCCGGATAGCCGGGT1327690.15601911703936777No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAATA1316350.15468653429247173No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCGT1285000.15100254230700508No Hit
TCCGGCCGTGCCGGTGGCGGCGGA1281900.15063825601817105No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1253860.14734322777981432No Hit
TGGGGAAGGTGGCTCGGGGGG1246680.1464994937301923No Hit
GCCTCGGTTGGCCCCGGATAGCCGGGTCCC1246360.14646188998424814No Hit
ATTGATCATCGACACTTCGAACGCA1230120.14455349987758218No Hit
TACCCGTCGCCGCGCTCTCCCTCTCCCC1229910.14452882241930634No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT1204410.14153227391438133No Hit
CGCTTCTGGCGCCAAGCGTCCGTCC1147590.13485525877517196No Hit
CTCGCCCGTCACGTTGAACGCACGTTCG1144010.13443456686742172No Hit
TCGGTTGGCCCCGGATAGCCGGGT1124430.1321336876624636No Hit
GGGGGTGGGGGCCGGGCCG1118960.13149089863023067No Hit
TCCCGGGGAGCCCGGCGGGTGCCGGCGCGGG1076560.12650840229262988No Hit
CTCGCTTCTGGCGCCAAGCGTCC1067480.12544139600146445No Hit
GGGGGTGGGGGCCGGGCCGC1053560.1238056330528936No Hit
TTCGGTTGGCCCCGGATAGCCGGGTCCC1038300.12201240441818162No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCC1028190.12082436106975843No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCC1020070.11987016601642543No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCC1008480.1185082053430105No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCCC980190.11518379917813489No Hit
CCCGGGGAGCCCGGCGGGTGCCGGCGCGG979320.11508156399384921No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCA976160.11471022700265064No Hit
GGGGGGTGGGGGCCGGGCCGC965480.11345520198176441No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG952380.11191579863217549No Hit
CCTCCCCTCTTCCCCGCGGGG935980.10998860665253744No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCC931920.10951150912587096No Hit
CTCGCCCGTCACGTTGAACGCACGTTC929750.10925650872368714No Hit
TCGCTTCTGGCGCCAAGCGTC925770.10878881213350669No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCC914410.10745387915248913No Hit
TAAGTGGGAGGCCCCCGGCGCCCGGCCC871380.10239735044006078No Hit
AGCCGCCTGGATACCGCAGCTAGGAATAATGGAAT870840.10233389411878002No Hit
CCCCCCGCCTCCCCTCCG867860.10198370923467505No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)