FastQCFastQC Report
Tue 19 Sept 2023
SRR17658110.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR17658110.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52987522
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length15-89
%GC65

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT39194687.396964138085189No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT33634856.347692575621861No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC26265004.956827382869499No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC17114473.2299057125185056No Hit
TCGCTTCTGGCGCCAAGCGTCCG16320053.0799798488406385No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC11574482.1843784278117404No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC10816212.0412749250663205No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAC10438341.9699619091453267No Hit
CTCGCTTCTGGCGCCAAGCGTCCG9354801.7654722559020595No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT8146021.5373468493204872No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT5447171.02800995298478No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC5102470.9629569014380404No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCG5078610.9584539544989479No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCC5050820.953209323508278No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATA4827600.9110824242733979No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC4644370.8765025848915902No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCC4589810.8662058210610415No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCC4375310.8257245922917476No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC3959540.7472589490031257No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCG3010620.5681752771907318No Hit
TCGCTTCTGGCGCCAAGCGTCCGTCC2985430.5634213277609019No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCG2498090.47144873089177486No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG2493510.47058437644998763No Hit
CGCTTCTGGCGCCAAGCGTCCG2295310.4331793436198055No Hit
CTCGCTTCTGGCGCCAAGCGTCCGTCC2080280.392598091301571No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT2025350.3822314997104413No Hit
TCTCGCTTCTGGCGCCAAGCGTCCG1801860.3400536450827046No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAG1793430.3384627044835197No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT1780800.3360791244399012No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1780100.33594701786582887No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCA1688410.31864294389913156No Hit
TGGGGGTGGGGGCCGGGCCGC1639690.3094483263437003No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT1552460.29298595997752075No Hit
CGGTTGGCCCCGGATAGCCGGGTCCCCG1485320.28031505228721587No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC1449130.2734851424076785No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT1432990.27043914225692606No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAA1373150.2591459174105179No Hit
CGGTTGGCCCCGGATAGCCGGGTCCC1367570.2580928392914845No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGA1249330.23577815169390257No Hit
TGGGGGTGGGGGCCGGGCCG1195620.22564180298901315No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCA1144800.216050865711365No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGG1132760.21377863263732166No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCC1119990.21136863127888864No Hit
TTCGGTTGGCCCCGGATAGCCGGGTCCCCG1077130.2032799344721197No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1050020.19816363558197722No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCCG1046280.1974578090290767No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1035570.19543657844577067No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC1020490.19259062539289912No Hit
CTCGGTTGGCCCCGGATAGCCGGGT1011350.1908656909828695No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAAT984220.1857456176191821No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGCAC983760.1856588047276489No Hit
ATTGATCATCGACACTTCGAACGCA978210.1846113883189329No Hit
TGGGGAAGGTGGCTCGGGGGG950960.17946866811397597No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT945450.1784288006523498No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCGT915790.17283125638522973No Hit
CGCTTCTGGCGCCAAGCGTCCGTCC904600.17071943843684556No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG903600.17053071475959944No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCCC896190.16913227231120564No Hit
CCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT891360.16822073695010686No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCC880930.16625234899642977No Hit
CCTCGGTTGGCCCCGGATAGCCGGGT875090.1651502027213124No Hit
TCGGTTGGCCCCGGATAGCCGGGT850300.16047174276238094No Hit
GCCTCGGTTGGCCCCGGATAGCCGGGTCCC816830.15415516128495307No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGG814730.15375884156273623No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCA809630.15279635080878098No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCC807540.15240191832333658No Hit
CTCGCTTCTGGCGCCAAGCGTCC805480.15201314754820955No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCC766840.14472086465941925No Hit
CTCGCCCGTCACGTTGAACGCACGTTCG762890.14397540613429705No Hit
TCCGGCCGTGCCGGTGGCGGCGGA751800.1418824605536375No Hit
TTCGGTTGGCCCCGGATAGCCGGGTCCC711800.13433351346379246No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCC695190.1311988131847343No Hit
TCGCTTCTGGCGCCAAGCGTCCGT694370.13104405976939248No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGG669100.1262750124453829No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCC667240.1259239864057051No Hit
CGGGGCTACGCCTGTCTGAGCGTCGCT665080.12551634326285346No Hit
TCGTTTCCCGGTCAGGG659730.12450667158958668No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCGT658650.12430285001816088No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCC657280.12404429858033368No Hit
TCGCTTCTGGCGCCAAGCGTCC651650.122981784277438No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG650060.12268171363061665No Hit
GGGGGTGGGGGCCGGGCCGC640820.12093790685286246No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT637010.12021886964255471No Hit
TACCCGTCGCCGCGCTCTCCCTCTCCCC633040.11946963664388759No Hit
CTCGCCCGTCACGTTGAACGCACGTTC630460.1189827295565926No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCG626700.11827312853014715No Hit
CCCCGCCCCTTGCCTCTCGGCGCCCC625140.11797871959364321No Hit
TCGCTTCTGGCGCCAAGCGTCCGTC621030.11720306528016163No Hit
CCGGGGCTACGCCTGTCTGAGCGTCGCT620200.11704642462804735No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCGTCCG604290.11404383092306147No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGC592540.1118263277154195No Hit
GGTGACTCTAGATAACCTCGGGCCGATCGCAC575650.10863878480673242No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAATA573160.10816886285038958No Hit
CCCGGGGAGCCCGGCGGGTGCCGGCGCGGG558710.10544180571418305No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCC548290.10347530499727842No Hit
AGCCGCCTGGATACCGCAGCTAGGAATAATGGAAT538930.10170885137825468No Hit
TCGCTTCTGGCGCCAAGCGTC535280.10102000995630632No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGC530430.10010470012166262No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)