FastQCFastQC Report
Tue 19 Sept 2023
SRR17658111.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR17658111.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58399370
Total Bases1.7 Gbp
Sequences flagged as poor quality0
Sequence length15-89
%GC65

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT44220327.572054287571937No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT44189577.566788819810899No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC30351635.1972529840647255No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT14983292.565659526806539No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC14948522.559705695455276No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC12611692.1595592555193663No Hit
TCGCTTCTGGCGCCAAGCGTCCG12068832.066602773283342No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC10761861.842804126140402No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAC9595521.6430862182246142No Hit
CTCGCTTCTGGCGCCAAGCGTCCG7214941.235448259116494No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATA7194811.2320013041236575No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC6969421.1934067096956698No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT5116050.8760454093939712No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC5028630.8610760698274655No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCC4698140.8044847059137796No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCC4525380.7749021950065558No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGG4287530.7341740159183224No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG4254030.7284376526664585No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCG4139970.7089066200542917No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCC4083890.6993037767359477No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC3338170.571610618402219No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAG2592580.44393972058260217No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT2464980.4220901698083387No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAA2348640.40216872202559717No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT2307480.3951207007883818No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCG2160570.3699646074949096No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCG2159940.3698567296188298No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCA2050040.35103803345823764No Hit
TCGCTTCTGGCGCCAAGCGTCCGTCC1966220.33668513889790247No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAAT1960400.3356885528045936No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT1954910.3347484741701837No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGG1953950.3345840888352049No Hit
CGGTTGGCCCCGGATAGCCGGGTCCCCG1894770.32445041787265855No Hit
CGGTTGGCCCCGGATAGCCGGGTCCC1782780.30527384113903966No Hit
TACCCGTCGCCGCGCTCTCCCTCTCCCC1622990.27791224460126884No Hit
CCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1527150.2615011086592201No Hit
TCGGTTGGCCCCGGATAGCCGGGT1424410.24390845312201143No Hit
CTCGGTTGGCCCCGGATAGCCGGGT1367280.23412581334353436No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1366090.23392204402205025No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT1362990.2333912163778479No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1361860.23319772113979997No Hit
GTCTAGCGGTTAGGATTCCTGG1360560.23297511599868287No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT1344210.23017542826232543No Hit
CCCGGGGAGCCCGGCGGGTGCCGGCGCGGG1331290.22796307562906928No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGA1312180.22469078005464782No Hit
TCTCGCTTCTGGCGCCAAGCGTCCG1289130.22074381966791765No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG1281410.21942188759912995No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC1269620.21740303020392174No Hit
CTCGCTTCTGGCGCCAAGCGTCCGTCC1211900.2075193619383223No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGG1195730.20475049645227336No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG1095890.18765442161447976No Hit
TGGGGAAGGTGGCTCGGGGGG1086790.18609618562666No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCA1077660.1845328125971222No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGG1070840.18336499177987708No Hit
TCGTTTCCCGGTCAGGG1070480.18330334727926004No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC1065860.18251224285467463No Hit
TGGGGGTGGGGGCCGGGCCGC1033990.17705499220282683No Hit
TTCGGTTGGCCCCGGATAGCCGGGTCCCCG1003520.1718374701644898No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGC965330.165298016057365No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAATA949420.1625736715995395No Hit
TTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGG949280.16254969873818845No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCC935210.16014042617240565No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT926720.158686643366187No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGCAC923920.15820718613916554No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCCG919000.15736471129739926No Hit
GCCTCGGTTGGCCCCGGATAGCCGGGTCCC905130.1549896856764037No Hit
TTCGGTTGGCCCCGGATAGCCGGGTCCC880890.1508389559681894No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGG874390.14972593026260386No Hit
CCTCGGTTGGCCCCGGATAGCCGGGT872880.14946736582946016No Hit
CTCGCCCGTCACGTTGAACGCACGTTCG855490.14648959398020903No Hit
CTCGCCCGTCACGTTGAACGCACGTTC842230.14421902154081456No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT835330.14303750194565457No Hit
TTTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGG831140.14232002845236172No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCA811820.13901177358591368No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG799280.13686449014775331No Hit
TGGGGGTGGGGGCCGGGCCG792910.1357737249562795No Hit
CGGGGCTACGCCTGTCTGAGCGTCGCT782290.13395521218807668No Hit
CGCTTCTGGCGCCAAGCGTCCGTCC776470.1329586260947678No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCC767640.13144662348241085No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCGT753890.1290921460282876No Hit
TCCCGGGGAGCCCGGCGGGTGCCGGCGCGGG692280.11854237468657625No Hit
AGCCGCCTGGATACCGCAGCTAGGAATAATGGAAT664600.11380259752802127No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGC663170.11355773187279247No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCC647670.11090359365178083No Hit
TCGCTTCTGGCGCCAAGCGTCCGT637110.10909535496701421No Hit
GTCTAGCGGTTAGGATTCCTGGT632100.10823746900009366No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCC630220.10791554771909355No Hit
TACCCGTCGCCGCGCTCTCCCTCTCCCCC613410.10503709200972544No Hit
CCCGGGGAGCCCGGCGGGTGCCGGCGCGG609520.1043709889336135No Hit
ATTGATCATCGACACTTCGAACGCA607050.103948039165491No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGA591580.10129903798619747No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)