FastQCFastQC Report
Thu 21 Sept 2023
SRR17658112.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR17658112.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70861797
Total Bases2.1 Gbp
Sequences flagged as poor quality0
Sequence length15-89
%GC64

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT46205976.520575536632242No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT40275645.683688772386057No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC30653244.325777964676792No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC15837522.234987069266674No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC13472201.9011936713939106No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC12908611.8216599841519683No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAC11277001.5914075676065624No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT10612351.4976123171135498No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCC8467081.1948723230939233No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGG8333891.176076581856935No Hit
CTCGCTTCTGGCGCCAAGCGTCCG8126541.1468153989941858No Hit
TCGCTTCTGGCGCCAAGCGTCCG8093131.1421005877115986No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCG7108281.0031187890987299No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCC6884110.9714839718219395No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC6415270.9053213821263945No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT6271340.8850100146345429No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC5906490.8335224690957245No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCC5871570.8285945669709731No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC5350660.7550838712148381No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATA5199360.7337324510695094No Hit
TCGCTTCTGGCGCCAAGCGTCCGTCC3939480.5559384840325176No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGT3932680.5549788696439634No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG3616810.5104033700979951No Hit
TACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCC3174900.44804113562065045No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCG3017730.42586134246637863No Hit
CTCGCTTCTGGCGCCAAGCGTCCGTCC2661410.37557754850614355No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCG2642080.37284970348691554No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCA2531740.357278548834995No Hit
CGGTTGGCCCCGGATAGCCGGGTCCCCG2438820.34416570045492917No Hit
GTCTAGCGGTTAGGATTCCTGG2356960.33261363665389404No Hit
CGGTTGGCCCCGGATAGCCGGGTCCC2217970.3129994007913742No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGG2153510.3039028208669334No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT2147950.3031181949845274No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAG2140760.3021035438883945No Hit
TCGGTTGGCCCCGGATAGCCGGGT1984920.2801114400189428No Hit
TCTCGCTTCTGGCGCCAAGCGTCCG1848730.2608923394928864No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC1848280.26082883559952624No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT1830680.25834512777032737No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1823160.25728390715239696No Hit
TCGTTTCCCGGTCAGGG1818670.25665027941642515No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1731320.24432346811639563No Hit
CTCGGTTGGCCCCGGATAGCCGGGT1689720.23845288597465286No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG1653090.23328366905513276No Hit
GCCTCGGTTGGCCCCGGATAGCCGGGTCCC1641550.23165514698985123No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT1613180.22765157931289834No Hit
TGGGGAAGGTGGCTCGGGGGG1573580.2220632366972009No Hit
TCCCGGGGAGCCCGGCGGGTGCCGGCGCGGG1564250.22074658930819946No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAA1542260.21764336571933113No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1507300.21270981880405884No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT1506980.21266466047989158No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGA1486860.2098253308478756No Hit
TTCGGTTGGCCCCGGATAGCCGGGTCCC1397110.1971598321165917No Hit
TTCGGTTGGCCCCGGATAGCCGGGTCCCCG1395890.19698766600570405No Hit
TACCCGTCGCCGCGCTCTCCCTCTCCCC1366860.19289095928515615No Hit
TTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGT1364590.1925706174230947No Hit
CCCGGGGAGCCCGGCGGGTGCCGGCGCGGG1355630.19130618434641164No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCC1355320.19126243721987463No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCC1350460.19057659517158448No Hit
CCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1337580.1887589726238526No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCA1329040.18755380984763906No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC1315190.18559930112977518No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCCC1230850.17369726031644386No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG1228570.1733755072567522No Hit
TTTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGT1216250.171636911776313No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCCG1214470.17138571859813265No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT1206670.17028498444655588No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAAT1190750.1680383578192351No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCA1186570.16744847720980038No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGC1181840.16678098073070316No Hit
ATTGATCATCGACACTTCGAACGCA1180040.16652696515726237No Hit
TGGGGGTGGGGGCCGGGCCGC1152640.16266028365044144No Hit
CGCTTCTGGCGCCAAGCGTCCGTCC1120370.15810634889770012No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG1100210.15526137447516325No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGCAC1076150.15186603297683798No Hit
CCTCGGTTGGCCCCGGATAGCCGGGT1067830.15069191654848946No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGG1062410.14992704743290663No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCC1057430.14922427101305377No Hit
TCGCTTCTGGCGCCAAGCGTCCGT1048110.14790903482168255No Hit
CGGGGCTACGCCTGTCTGAGCGTCGCT1031200.14552269962896933No Hit
GTCTAGCGGTTAGGATTCCTGGT1006480.14203421908704914No Hit
TCGCTTCTGGCGCCAAGCGTCCGTC980880.13842155315366897No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCC967770.13657147306044187No Hit
CTCGCCCGTCACGTTGAACGCACGTTC959000.13533385273873313No Hit
CTCGCCCGTCACGTTGAACGCACGTTCG948790.13389301995827174No Hit
TCGGTTGGCCCCGGATAGCCGGGTCC938610.13245642077070102No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCGT921280.13001081527751832No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCC903910.12755956499381466No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCC901350.12719829840047664No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCC900990.12714749528578848No Hit
CCCCGCCCCTTGCCTCTCGGCGCCCC873320.12324271144295142No Hit
GTCTAGGGGTATGATTCTCGCTT867430.12241151603874793No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCC853400.12043160576353996No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG853130.12039350342752386No Hit
TTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGG820840.11583674627952209No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCG804850.11358024126878973No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGG792500.11183741219545984No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGG791680.11172169398978127No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG770440.10872431022317991No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCC761510.10746411073938754No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCC760750.10735685971949031No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC751710.10608113706176545No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT750540.10591602693902893No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT719080.10147639919433599No Hit
CCGGGGCTACGCCTGTCTGAGCGTCGCT718420.10138326015074102No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGC714470.10082583708680151No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)