FastQCFastQC Report
Thu 21 Sept 2023
SRR17658113.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR17658113.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences105048702
Total Bases3.1 Gbp
Sequences flagged as poor quality0
Sequence length15-89
%GC65

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT59764595.689226888305578No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT59408995.6553759226839375No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC42244024.021374771484563No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC27243862.5934504169313772No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC22183622.1117462260504656No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT20374601.9395384818748165No Hit
CTCGCTTCTGGCGCCAAGCGTCCG16975541.615968562848116No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC16511221.5717681118991838No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAC15213811.4482625401692255No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC11167871.0631135642209077No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC10764071.024674250615681No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCG9736120.9268196383806817No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCC8903510.8475602106916086No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATA8899060.8471365976516302No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCC8672870.825604680008326No Hit
TCGCTTCTGGCGCCAAGCGTCCG8172600.7779820068600181No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCC7636090.7269095052692798No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT6626210.6307750475584173No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCG6485120.6173441343425643No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC6396260.6088852006948168No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG6205340.5907107733706219No Hit
CTCGCTTCTGGCGCCAAGCGTCCGTCC4591540.4370867904679108No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCG4480770.4265421575604047No Hit
TCGCTTCTGGCGCCAAGCGTCCGTCC4370040.41600133241056136No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG4262310.40574608908542253No Hit
CGGTTGGCCCCGGATAGCCGGGTCCCCG3501120.33328541270314793No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT3347310.31864363255054784No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGG3303940.3145150713047363No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC3240380.3084645443786635No Hit
TCTCGCTTCTGGCGCCAAGCGTCCG3152940.3001407861279428No Hit
TCGTTTCCCGGTCAGGG3002520.2858217134372588No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCA2927020.2786345708488621No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGG2844950.27082200406436246No Hit
TCCCGGGGAGCCCGGCGGGTGCCGGCGCGGG2841280.2704726422988073No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAG2799840.26652780536022236No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT2742820.2610998468120053No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT2740340.2608637658369163No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG2657000.2529303027466251No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT2595200.24704731715771222No Hit
GTCTAGCGGTTAGGATTCCTGG2576650.2452814695416227No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAA2546590.24241993965808356No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAAT2487550.23679968934789886No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGA2466440.23479014524139477No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCCG2439700.23224465924386195No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCCC2416320.23001902488999815No Hit
CGGTTGGCCCCGGATAGCCGGGTCCC2337720.22253678108274005No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGG2328520.22166099682031293No Hit
TTCGGTTGGCCCCGGATAGCCGGGTCCCCG2311900.22007887351144997No Hit
ATTGATCATCGACACTTCGAACGCA2290190.218012213040005No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGG2251220.21430250513709345No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCC2227300.21202546605478284No Hit
GCCTCGGTTGGCCCCGGATAGCCGGGTCCC2113870.20122761726270544No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT2063740.1964555449718931No Hit
CTCGGTTGGCCCCGGATAGCCGGGT2041410.19432986425667592No Hit
CCCGGGGAGCCCGGCGGGTGCCGGCGCGGG2041290.19431844098368775No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCA1983770.18884288546468664No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1964950.18705133548437372No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC1892780.18018118872139896No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT1892710.18017452514548918No Hit
CCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1801820.1715223477963583No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCC1764090.1679306803809913No Hit
TGGGGAAGGTGGCTCGGGGGG1752080.16678740114275759No Hit
GTCTAGCGGTTAGGATTCCTGGT1742560.1658811548190286No Hit
GTCTAGGGGTATGATTCTCGCTT1658780.1579058063944474No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1619800.1541951465521202No Hit
TCGTTTCCCGGTCAGG1618300.15405235563976794No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCC1605440.15282816155120127No Hit
TCGGTTGGCCCCGGATAGCCGGGT1592560.15160206358380324No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCC1573240.14976291663270622No Hit
GCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC1531290.14576953078392155No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGCAC1528510.14550489162636204No Hit
TGGGGGTGGGGGCCGGGCCGC1507450.14350010721693637No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC1469930.13992843052929868No Hit
TACCCGTCGCCGCGCTCTCCCTCTCCCC1465230.13948101900392829No Hit
CGCTTCTGGCGCCAAGCGTCCGTCC1457230.13871946747138292No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCC1437500.13684129100424297No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT1436920.13678607851813343No Hit
TTCGGTTGGCCCCGGATAGCCGGGTCCC1434830.13658712318025595No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCA1383320.13168368325007956No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCC1361360.12959322429324258No Hit
CCTCGGTTGGCCCCGGATAGCCGGGT1356300.12911154294890764No Hit
CCCCGCCCCTTGCCTCTCGGCGCCCC1350810.1285889282096984No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT1340570.12761414224804035No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCGT1284270.12225472333775242No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG1250370.11902764871859149No Hit
TCGCTTCTGGCGCCAAGCGTCCGT1221510.11628035156493413No Hit
CTCGCCCGTCACGTTGAACGCACGTTCG1215190.1156787258542233No Hit
AGCCGCCTGGATACCGCAGCTAGGAATAATGGAAT1203130.1145306869189112No Hit
ATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGG1189580.1132408090106625No Hit
CTCGCCCGTCACGTTGAACGCACGTTC1143880.10889044588099717No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCC1142200.10873052005916266No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCG1123030.10690565219930086No Hit
CTCGCTTCTGGCGCCAAGCGTCCGT1109000.10557008119909943No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG1104880.10517788215983859No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC1101180.10482566457603636No Hit
GTCTAGTGGTTAGGATTCGGCG1091700.10392322600997013No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAATA1069130.10177469874877655No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCC1066900.10156241625907954No Hit
GTATAGTGGTGAGTATCCCCG1052030.10014688234796085No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)