FastQCFastQC Report
Tue 19 Sept 2023
SRR17658114.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR17658114.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67221488
Total Bases2 Gbp
Sequences flagged as poor quality0
Sequence length15-89
%GC67

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT40229055.984552142017446No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT31155524.634756076806869No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC23175913.4476936898510786No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC16060902.3892508895369886No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC15870062.3608611579678214No Hit
TCGCTTCTGGCGCCAAGCGTCCG9822901.4612738117311537No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC9761431.4521294143325123No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAC9549881.4206588226669423No Hit
CTCGCTTCTGGCGCCAAGCGTCCG9017321.3414341556973568No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT8132531.2098110651760638No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC7668981.1408524607488606No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC6499840.9669289082086372No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCG6029010.8968873167460976No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCC5318650.7912127741058037No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCC5270810.7840960021593094No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCC5163050.7680654138450491No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT4052150.6028057575875143No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC3913760.5822185905792505No Hit
CTCGCTTCTGGCGCCAAGCGTCCGTCC3785280.5631056545490335No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCG3716370.5528544682021915No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATA3547170.5276839453479518No Hit
TCGCTTCTGGCGCCAAGCGTCCGTCC3491830.5194514587359328No Hit
TCCCGGGGAGCCCGGCGGGTGCCGGCGCGGG3458800.5145378513489616No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG3307070.49196619985561757No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG2958280.44007951743049784No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCG2856970.42500844372858865No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCCC2505100.37266357448082676No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC2375620.35340187649520644No Hit
TCGTTTCCCGGTCAGGG2173980.3234055158076834No Hit
CGGTTGGCCCCGGATAGCCGGGTCCCCG2024370.3011492396597945No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT2021270.3006880775980443No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGG2005040.29827367106184854No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGG1998310.2972725031019843No Hit
GTCTAGCGGTTAGGATTCCTGG1955230.29086383806320976No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT1940090.2886115820584037No Hit
TCTCGCTTCTGGCGCCAAGCGTCCG1893430.28167034921928535No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG1879010.2795252018223697No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT1864230.2773265001215087No Hit
CCCCGCCCCTTGCCTCTCGGCGCCCC1803740.26832788943916264No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCA1798810.2675944929990244No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCC1768190.2630394019245751No Hit
CGGTTGGCCCCGGATAGCCGGGTCCC1665560.24777196244153357No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCCG1627670.24213537195130222No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCC1626500.24196132046348037No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG1619210.24087684580859026No Hit
TGGGGGTGGGGGCCGGGCCGC1574870.2342807407060076No Hit
CCCGGGGAGCCCGGCGGGTGCCGGCGCGGG1573030.23400701870806548No Hit
GCCTCGGTTGGCCCCGGATAGCCGGGTCCC1485500.22098588475161396No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAG1429280.21262248761884No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1367650.20345428830733409No Hit
GTCTAGGGGTATGATTCTCGCTT1291170.19207697395808912No Hit
GTCTAGCGGTTAGGATTCCTGGT1268180.18865693660336708No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCA1256060.18685394170387898No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC1255500.18677063500885313No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1249130.18582302135293405No Hit
TCGTTTCCCGGTCAGG1239550.18439788182017036No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC1238980.18431308750559047No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCC1238300.18421192937591624No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1234130.18359159202188444No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCG1231570.18321076141605197No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGG1218940.18133189791930818No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCC1207840.17968064021433147No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC1163700.17311428750282945No Hit
TTCGGTTGGCCCCGGATAGCCGGGTCCCCG1150470.1711461668328437No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT1124200.1672381902643988No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCC1096460.16311153362151104No Hit
TACCCGTCGCCGCGCTCTCCCTCTCCCC1092760.1625611143865188No Hit
GCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC1084700.16136209302596813No Hit
GTCTAGTGGTTAGGATTCGGCG1083930.16124754632030758No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGA1068270.1589179340986918No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAA1052290.15654071805134692No Hit
CCCCGCCCCTTGCCTCTCGGCGCCC1007240.14983899196042788No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCC1006970.14979882623246898No Hit
CCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT999190.14864145821943126No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCA993180.14774739886745739No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGCAC969370.1442053767093046No Hit
TCGGTTGGCCCCGGATAGCCGGGT945990.14072732219197528No Hit
CGCTTCTGGCGCCAAGCGTCCGTCC926720.13786067931135354No Hit
CTCGGTTGGCCCCGGATAGCCGGGT915660.13621537208459294No Hit
GTATAGTGGTGAGTATCCCCG915350.1361692558784179No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCG893110.13286078999024836No Hit
TCTCGCTTCTGGCGCCAAGCGTCCGTCC855740.12730155571682675No Hit
TGGGGGTGGGGGCCGGGCCG849430.12636286777823186No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAAT840000.12496004253877867No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT826000.12287737516313237No Hit
TGGGGAAGGTGGCTCGGGGGG821690.12223621113534411No Hit
CTCGCTTCTGGCGCCAAGCGTCCGTC807030.12005536086913161No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCC801120.11917617771269806No Hit
TCGCTTCTGGCGCCAAGCGTCCGTC799540.11894113382316084No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCC797230.11859749370617918No Hit
ATTGATCATCGACACTTCGAACGCA795580.11835203647976374No Hit
CTCGCCCGTCACGTTGAACGCACGTTCG780390.11609234237718749No Hit
TCCCCCGCCTCCCCTCCG768530.11432802558610426No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCGTCCG765180.11382967303550316No Hit
CCCCCGCCCCTTGCCTCTCGGC764620.11374636634047731No Hit
GTATAGTGGTGAGTATCCCCGC760150.11308140039982453No Hit
CTCGCCCGTCACGTTGAACGCACGTTC747400.11118468546843237No Hit
TCCCGGGGAGCCCGGCGGGTGCCGGCGCGG742970.11052567000599571No Hit
TCGCTTCTGGCGCCAAGCGTCCGT740320.11013145082417694No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGC728430.10836267117443162No Hit
CGGGGCTACGCCTGTCTGAGCGTCGCT708890.10545586256585097No Hit
ACCGCCCGTCCCCGCCCCTT707000.10517470247013871No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGG705320.10492478238506116No Hit
CTCGCTTCTGGCGCCAAGCGTCCGT704750.10483998807048127No Hit
TTCGGTTGGCCCCGGATAGCCGGGTCCC684040.10175912797407875No Hit
TCCCGTGGATCGCCTCAGCTGCGGCGGGCGTCGCG680570.10124292398882928No Hit
AGCCGCCTGGATACCGCAGCTAGGAATAATGGAAT672890.10010043217133187No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)