FastQCFastQC Report
Thu 21 Sept 2023
SRR17658115.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR17658115.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences117543942
Total Bases3.6 Gbp
Sequences flagged as poor quality0
Sequence length15-89
%GC65

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT73775706.2764357520015785No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT68406225.819629564575944No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC52010044.424731646314874No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC37722963.2092644978675295No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC27059502.3020752528445914No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAC20086891.7088834744031298No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT18389021.5644379188848372No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC15601771.3273138312819217No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC13827241.1763464594372715No Hit
CTCGCTTCTGGCGCCAAGCGTCCG13094321.1139936075991053No Hit
TCGCTTCTGGCGCCAAGCGTCCG11837321.0070548765499119No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGG10974620.9336610473723946No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG10208870.8685151974909945No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCC10135950.8623115600461995No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATA10091530.8585325477683912No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC9651260.8210767680396494No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCC8877680.7552647842965825No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCC8730650.7427562706719502No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT8523090.7250981934909074No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCG7697460.6548580785218178No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG5773140.4911473872468902No Hit
CTCGCTTCTGGCGCCAAGCGTCCGTCC5362610.4562217251485406No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCG5283980.4495323119246758No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT5123850.4359093214689022No Hit
TCGCTTCTGGCGCCAAGCGTCCGTCC5056430.4301735941440521No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCG4815270.4096570115029833No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGG4452220.37877068985826595No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC4378970.3725389778062744No Hit
GCCTCGGTTGGCCCCGGATAGCCGGGTCCC4161140.354007184819444No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC4002510.3405118062145644No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT3956960.3366366596757492No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAG3803320.32356580316151046No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGG3549020.30193134070661No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG3456540.294063644726157No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCC3335500.2837662191046817No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT3305210.281189310462295No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCCC3275210.2786370734444145No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCA3268350.2780534619129925No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT3131430.26640505216338584No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCCG2909760.24754657283826673No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAA2871390.24428226169239758No Hit
CGGTTGGCCCCGGATAGCCGGGTCCC2808540.23893532513993787No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC2772410.23586158102473712No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGT2772270.23584967058532033No Hit
TACCCGTCGCCGCGCTCTCCCTCTCCCC2736150.23277677721579218No Hit
CGGTTGGCCCCGGATAGCCGGGTCCCCG2725660.23188434500520666No Hit
TCTCGCTTCTGGCGCCAAGCGTCCG2676070.22766549721465018No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCC2505190.21312795516080277No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT2482960.21123674753055327No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCA2462420.20948931591897776No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT2308980.19643547431819158No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGG2301970.19583910160168014No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAAT2252820.19165768662071925No Hit
TGGGGGTGGGGGCCGGGCCGC2212380.18821727112061634No Hit
TTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGG2153750.18322934924200518No Hit
CCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT2141120.18215485745747748No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGA2076660.17667095085172488No Hit
TCCCGGGGAGCCCGGCGGGTGCCGGCGCGGG2030020.1727030730345933No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCC1986800.16902615023750012No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGG1963430.1670379576005712No Hit
TCGTTTCCCGGTCAGGG1957850.16656324151524543No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGCAC1954990.16631992825287414No Hit
CCCCGCCCCTTGCCTCTCGGCGCCCC1920540.1633891094106747No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCC1911240.16259791593513173No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCC1880650.15999548492256624No Hit
TTTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGG1841190.15663844249838074No Hit
CTCGGTTGGCCCCGGATAGCCGGGT1836770.15626241291107967No Hit
GTCTAGCGGTTAGGATTCCTGG1814740.15438822019428275No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGC1809960.15398156376276712No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG1749570.14884391064577365No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT1746530.14858528396129508No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCA1687280.14354461585098108No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC1685300.14337616820780094No Hit
TTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGT1671620.14221234812764744No Hit
GTCTAGCGGTTAGGATTCCTGGT1664240.14158449782124882No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT1659300.1411642294589712No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCG1642940.1397724095385537No Hit
GCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC1636220.13920070844654844No Hit
TTCGGTTGGCCCCGGATAGCCGGGTCCCCG1610250.13699132193473657No Hit
CGCTTCTGGCGCCAAGCGTCCGTCC1607750.13677863551657984No Hit
TCGGTTGGCCCCGGATAGCCGGGT1572580.13378656298595124No Hit
ATTGATCATCGACACTTCGAACGCA1504170.12796661183951105No Hit
TTTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGT1500530.12765694041467487No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCC1474250.12542118078701156No Hit
TGGGGGTGGGGGCCGGGCCG1455710.1238438983099614No Hit
TTCGGTTGGCCCCGGATAGCCGGGTCCC1444960.12292934671188754No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCC1437430.12228873522039953No Hit
CTCGCCCGTCACGTTGAACGCACGTTCG1410190.11997130400816403No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCC1410040.11995854282307462No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC1396330.11879217050590324No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCC1370240.11657257504601981No Hit
ATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGG1354270.11521393420683476No Hit
AGCCTCGGTTGGCCCCGGATAGCCGGGTCCC1334920.11356774133030181No Hit
AGCCGCCTGGATACCGCAGCTAGGAATAATGGAAT1327430.11293053282150432No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT1323880.1126285181077218No Hit
CGGGGCTACGCCTGTCTGAGCGTCGCT1308540.11132347424591223No Hit
TCTCGCTTCTGGCGCCAAGCGTCCGTCC1255580.1068179251636805No Hit
TACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCC1251250.10644955228743308No Hit
CTCGCCCGTCACGTTGAACGCACGTTC1250750.10640701500380173No Hit
CCTCGGTTGGCCCCGGATAGCCGGGT1238890.10539803063606629No Hit
CCCGGGGAGCCCGGCGGGTGCCGGCGCGGG1220040.10379437504316472No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAATA1215520.10340983799913739No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCGT1213390.10322862917086786No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCGTCCG1177410.10016764624075651No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)