FastQCFastQC Report
Thu 21 Sept 2023
SRR17658117.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR17658117.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences84026684
Total Bases2.5 Gbp
Sequences flagged as poor quality0
Sequence length15-89
%GC67

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT51777606.162042524491387No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT42251735.028370511443722No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC21800452.5944674908270806No Hit
TCGCTTCTGGCGCCAAGCGTCCG18535882.205951623653267No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC18461092.19705087969436No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC14369331.710091284811382No Hit
CTCGCTTCTGGCGCCAAGCGTCCG13446211.6002309456838737No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT12804291.5238361661397943No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC9696301.1539548555789731No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC8576271.020660294056112No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT7744310.9216488895360907No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAC7364710.8764727642947329No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC7009730.834226660664129No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCC6696250.7969194642977937No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCG6363430.7573106181364958No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCC6296540.7493500517050036No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCC6285160.7479957200262717No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATA6167640.7340096867323718No Hit
TCGCTTCTGGCGCCAAGCGTCCGTCC4922510.5858269975285469No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG4075970.48508042992628386No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG4006470.476809247881304No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGG3983030.47401965785059424No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGG3723630.4431485122035757No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCG3515400.4183670987183072No Hit
CTCGCTTCTGGCGCCAAGCGTCCGTCC3371290.40121659448086755No Hit
ATTGATCATCGACACTTCGAACGCA3315690.39459964884488363No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC3243850.38604998383608713No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCG3199380.38075761742543596No Hit
CGGTTGGCCCCGGATAGCCGGGTCCCCG2996450.3566069559522306No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG2896260.3446833627279639No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGA2697530.32103254247186525No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAA2675600.3184226572596867No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGG2641950.31441797703215324No Hit
TCGTTTCCCGGTCAGGG2604610.3099741505924475No Hit
CGGTTGGCCCCGGATAGCCGGGTCCC2581310.3072012219356413No Hit
CCCGGGGAGCCCGGCGGGTGCCGGCGCGGG2534870.30167440619220437No Hit
TCTCGCTTCTGGCGCCAAGCGTCCG2513040.2990764219613855No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC2499790.29749954193122746No Hit
TCCCGGGGAGCCCGGCGGGTGCCGGCGCGGG2388160.284214476439413No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCA2343960.27895424267843294No Hit
TGGGGGTGGGGGCCGGGCCGC2306050.274442580644977No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT2266790.26977025536316535No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT2202270.26209174218989767No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCCC2159550.25700764295304096No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGG2121340.25246027797550596No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAG2098580.24975161461804207No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT2014570.23975360017777209No Hit
GCCTCGGTTGGCCCCGGATAGCCGGGTCCC2004810.23859206439706698No Hit
GTCTAGCGGTTAGGATTCCTGG1953960.23254041537566802No Hit
CGCTTCTGGCGCCAAGCGTCCGTCC1860950.2214713126130266No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1858250.22114998611631517No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCCG1817780.2163336589600513No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAAT1727220.20555613024072208No Hit
CCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1581740.1882425825586548No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT1563260.18604328120338534No Hit
TGGGGAAGGTGGCTCGGGGGG1531150.18222187608879103No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCA1521860.18111627492047644No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCC1518490.18071521184865513No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC1493880.17778638033603705No Hit
TCGGTTGGCCCCGGATAGCCGGGT1480830.1762333022685984No Hit
TTCGGTTGGCCCCGGATAGCCGGGTCCCCG1477210.17580248674337787No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCGT1399430.16654590344181616No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT1386540.165011866944553No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGG1380550.16429899816110796No Hit
TGGGGGTGGGGGCCGGGCCG1379910.16422283188040598No Hit
CTCGGTTGGCCCCGGATAGCCGGGT1379880.1642192615859981No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCC1323870.15755352192643948No Hit
TCGCTTCTGGCGCCAAGCGTCCGT1268290.15093895648672748No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCC1264430.15047957860624372No Hit
CCCCGCCCCTTGCCTCTCGGCGCCCC1260650.15002972151084767No Hit
ATTGATCATCGACACTTCGAACGCAC1239330.1474924322849632No Hit
CCTCGGTTGGCCCCGGATAGCCGGGT1211180.14414230603221234No Hit
TAAGTGGGAGGCCCCCGGCGCCCGGCCC1195630.14229170343078157No Hit
AACGATGCCGACTGGCGATGCGGCGGCGTT1188190.14140627041762116No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCA1151310.13701718849216993No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT1142230.13593657938471068No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT1138250.1354629203265953No Hit
CGCTTCTGGCGCCAAGCGTCCG1126030.134008620404442No Hit
CCCGGGGAGCCCGGCGGGTGCCGGCGCGG1122640.13360517713634873No Hit
TTCGGTTGGCCCCGGATAGCCGGGTCCC1120120.13330527240608472No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC1117600.1330053676758207No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCC1022600.12169943538412155No Hit
CCCCCGCCCCTTGCCTCTCGGC1022110.1216411205754591No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGA1005090.119615573548041No Hit
TCCGGCCGTGCCGGTGGCGGCGGA1002780.11934066087863232No Hit
CCCCCGCCTCCCCTCCG983810.1170830447147004No Hit
CCCCCCGCCTCCCCTCCG983630.11706162294825295No Hit
TACCCGTCGCCGCGCTCTCCCTCTCCCC978400.11643920162314153No Hit
TCGCTTCTGGCGCCAAGCGTCCGTC975930.11614524738355736No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCC970570.11550735478267832No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG938190.11165381701841286No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC938000.11163120515382946No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCA937280.11154551808803975No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGC931610.1108707324449457No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCC927730.11040897436818999No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCC927710.11040659417191805No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGCAC922990.109844867851741No Hit
TCCCGGGGAGCCCGGCGGGTGCCGGCGCGG921130.10962350959845088No Hit
CTCGCCCGTCACGTTGAACGCACGTTCG913970.10877139933309758No Hit
GTCTAGCGGTTAGGATTCCTGGT912430.10858812422015844No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC911500.10847744509351338No Hit
AGCCGCCTGGATACCGCAGCTAGGAATAATGGAAT907600.10801330682048574No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCC896540.10669705828210477No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCC873360.10393841080293019No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGT865980.10306011837858553No Hit
AACGATGCCGACTGGCGATGCGGCGGCGTTA859420.10227941400139033No Hit
GTCTAGGGGTATGATTCTCGCTT858730.10219729723000849No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCGTCCG852810.10149275913351526No Hit
GGGGGTGGGGGCCGGGCCGC850790.10125235931004964No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCGT843100.10033717384349002No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)