FastQCFastQC Report
Tue 19 Sept 2023
SRR17658119.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR17658119.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45336479
Total Bases1.4 Gbp
Sequences flagged as poor quality0
Sequence length15-89
%GC65

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT25544685.634464908490137No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT22735755.014890988777492No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC17568193.8750671396426704No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC16160263.5645158945845794No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC13596832.9990926291386675No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC8066641.779282418469242No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGG7782961.7167102897426154No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT6715911.481347944995905No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAC6651241.4670834936255195No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC4494020.9912591579950442No Hit
CTCGCTTCTGGCGCCAAGCGTCCG4204430.9273834432532796No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC4093070.9028204417903738No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCC3741600.8252956741523751No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCC3633480.8014473289820323No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATA3278680.7231880534877885No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCC3264990.7201684100787801No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT2971560.6554456952865704No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCG2909260.6417040017598191No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGT2802920.6182482764045263No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC2623370.578644406858327No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGA2184730.48189229692936675No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG2011570.44369788840461116No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG2008380.4429942607585384No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCG1911970.42172882459619326No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGG1886830.416183621140936No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCA1844360.4068158888121859No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGG1797980.3965857163279045No Hit
TCGCTTCTGGCGCCAAGCGTCCGTCC1735020.3826984446674829No Hit
TTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGT1631670.35990223237230223No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG1629920.3595162297451463No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGG1510420.33315776463364083No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCG1485270.3276103554490855No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCA1434240.31635451884121835No Hit
TCGCTTCTGGCGCCAAGCGTCCG1384920.305475861943315No Hit
ATTGATCATCGACACTTCGAACGCA1376040.3035171743266609No Hit
CTCGCTTCTGGCGCCAAGCGTCCGTCC1363730.3008019215607811No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCCG1326470.2925833741963067No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAA1208410.2665425341037181No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC1198700.26440077095532716No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAG1196460.2639066875925676No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCCC1183340.26101277075354706No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1131800.24964444195148017No Hit
CGGTTGGCCCCGGATAGCCGGGTCCCCG1099940.2426169884079441No Hit
TACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCC1098840.24237435818516032No Hit
TTTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGT1087500.23987306116118987No Hit
TGGGGAAGGTGGCTCGGGGGG1076640.237477639143525No Hit
TCGTTTCCCGGTCAGGG1070510.23612552708383022No Hit
GCCTCGGTTGGCCCCGGATAGCCGGGTCCC1009780.22273013305687014No Hit
TCTCGCTTCTGGCGCCAAGCGTCCG1004460.22155668507031612No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT993300.21909509117371026No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGG968030.2135212132375785No Hit
TACCCGTCGCCGCGCTCTCCCTCTCCCC947480.20898843953011878No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCA923340.20366380900466488No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT909120.20052726194286064No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC906150.19987216034134456No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT886830.195610691337543No Hit
TGGGGGTGGGGGCCGGGCCGC860480.1897985946372236No Hit
TTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGG859330.1895449357679497No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCC843630.18608194077003642No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCC842750.18588783659180944No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCA824830.18193516968973264No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC819810.1808278935821196No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCC814420.17963900549047931No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT814070.17956180496504814No Hit
GTCTAGCGGTTAGGATTCCTGG812150.1791383049398256No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAAT806170.17781927881960133No Hit
CCCCGCCCCTTGCCTCTCGGCGCCCC788220.1738599947296304No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT782350.1725652316316845No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT768570.16952573665899373No Hit
CCCGGGGAGCCCGGCGGGTGCCGGCGCGGG763050.16830817408647902No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCC751220.16569879632690487No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGCAC730670.16116602261944515No Hit
TCCCGGGGAGCCCGGCGGGTGCCGGCGCGGG729140.16082854603684596No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC723720.15963304075731155No Hit
CGGTTGGCCCCGGATAGCCGGGTCCC720830.15899558499017977No Hit
CTCGCCCGTCACGTTGAACGCACGTTC712770.15721776717596442No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCC678100.14957050369968078No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGC671860.14819412861770762No Hit
CTCGCCCGTCACGTTGAACGCACGTTCG664500.14657071185435464No Hit
TAAGTGGGAGGCCCCCGGCGCCCGGCCC662310.1460876571380852No Hit
CCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT652550.1439348653432041No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGA651850.14378046429234173No Hit
ATTGATCATCGACACTTCGAACGCAC637520.14061965420825911No Hit
TTCGGTTGGCCCCGGATAGCCGGGTCCCCG621860.13716548212753796No Hit
CTCGCCCGTCACGTTGAACGCACGTT617070.13610893779377972No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCC611520.13488475803337088No Hit
CGCTTCTGGCGCCAAGCGTCCGTCC605660.133592200664723No Hit
TACCCGTCGCCGCGCTCTCCCTCTCCCCC592220.13062770048816538No Hit
CTCGGTTGGCCCCGGATAGCCGGGT582390.12845946858819804No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCGT579400.1277999555280859No Hit
CCTCGGTTGGCCCCGGATAGCCGGGT578820.12767202322879992No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCC578490.1275992341619648No Hit
CCCCCGCCCCTTGCCTCTCGGC557140.12289000211066237No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT529520.11679777778949266No Hit
TTCGGTTGGCCCCGGATAGCCGGGTCCC526610.11615591056376479No Hit
TCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC525860.11599048086641223No Hit
TTTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGG520420.11479056412828177No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCG518560.11438029847884747No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCC508510.11216354053432337No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCC508130.11207972282099808No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCC488150.10767267568352629No Hit
CCCCGCCCCTTGCCTCTCGGCGCCC487470.10752268609125998No Hit
TGGGGGTGGGGGCCGGGCCG483830.10671980062677562No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCC482590.10644629019381942No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG471540.10400895931949193No Hit
CCGACGAAGCCGAGCGCACGGGGTCGGCGGCGA469770.10361854523373991No Hit
ATCGACACTTCGAACGCACTTGCGGCCCCGGG468860.10341782386761883No Hit
GGGGGTGGGGGCCGGGCCGC459560.10136649562044729No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)