FastQCFastQC Report
Tue 19 Sept 2023
SRR17658121.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR17658121.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64053510
Total Bases1.9 Gbp
Sequences flagged as poor quality0
Sequence length15-89
%GC64

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC35744035.580339000938435No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT34533495.391350138345268No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT33769935.272143556223539No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC28794264.495344595479623No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAC16409942.561911127118561No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC13824622.1582923402636327No Hit
CTCGCTTCTGGCGCCAAGCGTCCG12833772.0036013639221335No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC9474471.4791492300734181No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT8638401.3486224252191643No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC8613031.3446616742782713No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCC8494381.3261380992236023No Hit
TCGCTTCTGGCGCCAAGCGTCCG8019341.2519751064383513No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCC7897301.23292228638212No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATA6588841.0286462053367567No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCC5642210.880858831935986No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCG5459820.8523842018961959No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT4541790.7090618453227622No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC4300680.6714198800346772No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG4265170.6658760776731829No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCG3686490.5755328630702674No Hit
TCGCTTCTGGCGCCAAGCGTCCGTCC3598440.5617865437819098No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCG3556450.5552310872581377No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC3535580.5519728739299377No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGA3056290.4771463733993656No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT2346560.36634370232013824No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCA2342770.36575200953078135No Hit
CTCGCTTCTGGCGCCAAGCGTCCGTCC2276980.3554809096332114No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT2162510.33760991396099915No Hit
TGGGGAAGGTGGCTCGGGGGG2150450.33572711315898224No Hit
TCTCGCTTCTGGCGCCAAGCGTCCG2143730.33467799032402756No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAG2101130.32802730092386817No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCA2084640.32545289087202245No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCCG2067830.3228285225899408No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC2047130.31959684957155354No Hit
CGGTTGGCCCCGGATAGCCGGGTCCC1849470.2887382752326922No Hit
CGGTTGGCCCCGGATAGCCGGGTCCCCG1808640.28236391729352533No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGG1553980.24260653319388742No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCC1537740.24007115300941356No Hit
CTCGCCCGTCACGTTGAACGCACGTTCG1529810.23883312561637915No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT1472830.22993743824499235No Hit
TACCCGTCGCCGCGCTCTCCCTCTCCCC1461090.22810459567321134No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAA1415620.22100584339562343No Hit
GTCTAGCGGTTAGGATTCCTGG1401500.21880143648646266No Hit
CTCGGTTGGCCCCGGATAGCCGGGT1395450.2178569136960644No Hit
TCGGTTGGCCCCGGATAGCCGGGT1377260.21501710054609027No Hit
CTCGCCCGTCACGTTGAACGCACGTTC1374560.21459557797847456No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGCAC1348990.2106036031436841No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC1333100.20812286477353079No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCA1323530.2066288014505372No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT1312260.20486933502941526No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT1282400.20020760767052423No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG1243720.1941689065907551No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCC1241900.19388476915628824No Hit
TGGGGGTGGGGGCCGGGCCGC1182220.18456755921728568No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1177750.1838697051886774No Hit
CCTCGGTTGGCCCCGGATAGCCGGGT1127680.17605280335144788No Hit
ATTGATCATCGACACTTCGAACGCA1095160.1709757982037206No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG1091260.1703669322727201No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1081580.16885569580808296No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCGT1063470.1660283722156678No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG1054720.16466232685765386No Hit
TCGCTTCTGGCGCCAAGCGTCCGTC1022990.15970865609082158No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCC999040.15596959479660052No Hit
GCCTCGGTTGGCCCCGGATAGCCGGGTCCC976690.15248032465355918No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCC955100.1491097053073282No Hit
CTCGCCCGTCACGTTGAACGCACGTT953350.1488364962357254No Hit
TCGCTTCTGGCGCCAAGCGTCCGT943860.14735492247029086No Hit
TCGTTTCCCGGTCAGGG924080.1442668793638319No Hit
TCGGTTGGCCCCGGATAGCCGGGTCC891310.13915084434873282No Hit
TTCGGTTGGCCCCGGATAGCCGGGTCCC890770.13906653983520964No Hit
TGGGGGTGGGGGCCGGGCCG883790.13797682593818825No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCC862020.13457810508744955No Hit
CCCCCGCCTCCCCTCCG857600.13388805703231563No Hit
CGGGGCTACGCCTGTCTGAGCGTCGCT851640.1329575849941713No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC839870.13112005883830566No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG834770.1303238495439204No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGG819010.12786340670480043No Hit
TACCCGTCGCCGCGCTCTCCCTCTCCCCC815040.1272436124109358No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAAT806470.12590566855742957No Hit
CGCTTCTGGCGCCAAGCGTCCGTCC803180.1253920355028163No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGA794970.12411029465832552No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCC792950.12379493332996115No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT782440.12215411770564953No Hit
CCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT776440.1212174008887257No Hit
TTCGGTTGGCCCCGGATAGCCGGGTCCCCG774010.12083803057787153No Hit
GGTGACTCTAGATAACCTCGGGCCGATCGCAC749990.11708804092078638No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCC746730.11657909145025777No Hit
CTCGCTTCTGGCGCCAAGCGTCCGT707260.1104170559895937No Hit
CGAAGCCGAGCGCACGGGGTCGGCGGCGA700850.10941633019018006No Hit
CCCGGGGAGCCCGGCGGGTGCCGGCGCGGG695540.10858733580720245No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGG688660.10751323385712977No Hit
TAAGTGGGAGGCCCCCGGCGCCCGGCCC687140.10727593226350905No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT674830.10535410159412029No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCGT667990.1042862444228271No Hit
CTCGCTTCTGGCGCCAAGCGTCCGTC665200.10385067110295751No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCC652860.10192415684948412No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCG643710.10049566370367526No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)