FastQCFastQC Report
Tue 19 Sept 2023
SRR17658122.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR17658122.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences85727998
Total Bases2.6 Gbp
Sequences flagged as poor quality0
Sequence length15-89
%GC69

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1066295712.438126689952563No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT973491211.355580705384021No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC28532113.3282137301281662No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC24959512.911477064937408No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC17789512.0751108640143445No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC16941511.9761933551743505No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC16031411.870032005179918No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT12780681.4908408335862458No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAC9844341.1483226285069668No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATA8704601.015374230481855No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT8385020.9780958608178393No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT7303680.8519597063260477No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG6932120.808617973325354No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT6826940.7963489360850349No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC5634620.6572671859198205No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG5620430.6556119507188305No Hit
CTCGCTTCTGGCGCCAAGCGTCCG5386710.6283489788248642No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC5362710.6255494266878832No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCC4676680.5455253953323393No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT4639140.5411464291980783No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGA4300940.5016960736677882No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG4282510.49954625092259825No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGG4038430.47107480568950183No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAG3910880.45619635256150504No Hit
CCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT3470380.40481290604733355No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCC3393510.39584617384859494No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT3262270.38053728957953736No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGG3208110.374219633590417No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC2988860.3486445583390388No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT2786820.32507699526588735No Hit
TGGGGGTGGGGGCCGGGCCGC2765100.3225434005819196No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCG2721500.3174575475330708No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCCC2690100.313794800153854No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCCG2541150.296420079703716No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCC2520740.29403929390722505No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCG2483240.2896649936931923No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCG2334370.27229960508351075No Hit
TCGCTTCTGGCGCCAAGCGTCCG2262840.2639557732352504No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCC2221290.2591090485981021No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT2136240.24918813571267578No Hit
CCCGGGGAGCCCGGCGGGTGCCGGCGCGGG2074950.24203877944286067No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGG1948810.22732480000291155No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAA1875940.21882465982700308No Hit
CTCGCTTCTGGCGCCAAGCGTCCGTCC1852170.21605193673133485No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAAT1851210.2159399546458556No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1799660.2099267499516319No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCC1792630.20910671447150792No Hit
TCGCTTCTGGCGCCAAGCGTCCGTCC1770290.20650079802400143No Hit
TGGGGGTGGGGGCCGGGCCG1677540.1956816954946271No Hit
CCCCCGCCCCTTGCCTCTCGGC1622130.18921822949837228No Hit
CCCCGCCCCTTGCCTCTCGGCGCCCC1590910.18557647876018288No Hit
CCTCCCCTCTTCCCCGCGG1522370.17758142444898808No Hit
CGGGGCTACGCCTGTCTGAGCGTCGCT1498850.17483786335474671No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT1426770.16642987510334722No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCA1392960.16248600603037527No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGA1370880.1599104180643528No Hit
CTCGCCCGTCACGTTGAACGCACGTTCG1349390.15740365242169777No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG1336920.15594905179052473No Hit
TCCCGGGGAGCCCGGCGGGTGCCGGCGCGGG1336420.15589072778767094No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC1312130.1530573477290348No Hit
CCGGGGCTACGCCTGTCTGAGCGTCGCT1279920.14930011546519492No Hit
TCCGGCCGTGCCGGTGGCGGCGGA1258750.1468306771843663No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCC1243640.14506812581812537No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAATA1240750.14473101308163058No Hit
CCCGCCCCTTGCCTCTCGGCGCCCC1210390.14118957962834966No Hit
CGGTTGGCCCCGGATAGCCGGGTCCCCG1209220.14105310146167183No Hit
CCTCGGTTGGCCCCGGATAGCCGGGT1194430.1393278774572573No Hit
CCGTCCCCGCTCGGCGGGGTCCCCGCG1191640.1390024295213333No Hit
CCCGGGGAGCCCGGCGGGTGCCGGCGCGG1185320.13826521412526163No Hit
CCCCGCCCCTTGCCTCTCGGCGCCC1174140.13696108942145133No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCG1153800.13458846898535995No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC1123940.1311053595349328No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT1119030.13053261782690878No Hit
GGGGGTGGGGGCCGGGCCGC1069570.12476320746461382No Hit
CTCGGTTGGCCCCGGATAGCCGGGT1062570.12394667142466105No Hit
TACCCGTCGCCGCGCTCTCCCTCTCCCC1040560.1213792488190381No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGCAC1036980.12096164895860509No Hit
TCTCGCTTCTGGCGCCAAGCGTCCG984060.11478863649656207No Hit
CCCCGCCCCTTGCCTCTCGGC974390.11366065028137015No Hit
CCGACGAAGCCGAGCGCACGGGGTCGGCGGCGA973790.11359066147794564No Hit
GGGGGGTGGGGGCCGGGCCGC972910.11348801123292299No Hit
CTCGCCCGTCACGTTGAACGCACGTTC966310.11271813439525323No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTT955400.11144550465298397No Hit
CCCCCCGCCTCCCCTCCG940870.1097506091300534No Hit
GGGGGTGGGGGCCGGGCCG937200.10932251094910672No Hit
TAAGTGGGAGGCCCCCGGCGCCCGGCCC933700.10891424292913035No Hit
CCCGCCCCTTGCCTCTCGGCGCCC917100.10697788603438517No Hit
CCCCCGCCTCCCCTCCG916430.10689973187056113No Hit
CGCTTCTGGCGCCAAGCGTCCGTCC904950.10556061276503856No Hit
CCCTCCCCTCTTCCCCGCGG883700.10308184264375332No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCA882150.10290103823490664No Hit
TGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCT868990.10136595047979542No Hit
TCCCGGGGAGCCCGGCGGGTGCCGGCGCGG868720.10133445551825439No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCGT867030.10113732038860862No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGC866530.10107899638575486No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)