FastQCFastQC Report
Tue 19 Sept 2023
SRR17658123.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR17658123.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74632736
Total Bases2.2 Gbp
Sequences flagged as poor quality0
Sequence length15-89
%GC66

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT56714057.599084937740994No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT52061656.975712373722972No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC31850944.267690253242224No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC21043632.8196246215601692No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC15177962.0336866653260577No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC12569391.6841657794777884No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAC12389141.6600141793006222No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT11560811.5490266898429128No Hit
CTCGCTTCTGGCGCCAAGCGTCCG8755631.1731621362507734No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC8603391.1527635808500978No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCC7322540.9811431809226451No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCC7316020.9802695696430049No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCC6980570.9353228052633632No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT6972890.9342937662100448No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATA6592810.8833670522275908No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC5573480.7467875758969897No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCG5561130.7451328060651562No Hit
TCGCTTCTGGCGCCAAGCGTCCG5398060.7232831448119496No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG4799000.6430154188639151No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCG3939370.5278340593060932No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT3842150.5148076039983313No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC3639170.4876104233938308No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT3635840.48716423849180607No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCG3569690.47830083570834114No Hit
TCGCTTCTGGCGCCAAGCGTCCGTCC3373900.4520670393217261No Hit
CTCGCTTCTGGCGCCAAGCGTCCGTCC2888370.38701113677515453No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAG2489460.3335614012596296No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGG2346700.3144330659403938No Hit
CGGTTGGCCCCGGATAGCCGGGTCCCCG2342510.31387165010271095No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT2223660.297947002773689No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT2210150.29613680516817714No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCA2206290.29561960585231656No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT2182620.292448075332519No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGA2154660.28870173002903177No Hit
CGGTTGGCCCCGGATAGCCGGGTCCC2124550.28466730738639945No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGG2118090.28380173547436344No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG2081130.27884948503026874No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAA1974570.26457156816547633No Hit
CCCGGGGAGCCCGGCGGGTGCCGGCGCGGG1961910.2628752616010218No Hit
GTCTAGCGGTTAGGATTCCTGG1850470.24794347617110002No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC1843130.2469599935342046No Hit
TCTCGCTTCTGGCGCCAAGCGTCCG1831680.24542581421643175No Hit
TGGGGGTGGGGGCCGGGCCGC1800420.24123730369472185No Hit
TCGTTTCCCGGTCAGGG1749690.23444001838549777No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1700940.22790803220720732No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCCC1630670.21849259284826436No Hit
TCCCGGGGAGCCCGGCGGGTGCCGGCGCGGG1592200.21333801831946775No Hit
CCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1544970.2070096961204799No Hit
TACCCGTCGCCGCGCTCTCCCTCTCCCC1477290.19794128946311174No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAAT1473180.19739059278223434No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCA1460230.19565542927436025No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG1438800.1927840351451138No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGCAC1436250.19244236202194168No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCGT1434120.19215696447199793No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCCG1422410.19058794789460753No Hit
GCCTCGGTTGGCCCCGGATAGCCGGGTCCC1416610.18981080902621605No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC1387080.18585410027042287No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT1340530.17961689090428093No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGG1322960.17726269609089504No Hit
CTCGGTTGGCCCCGGATAGCCGGGT1291690.1730728456745844No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCC1290900.17296699400113108No Hit
CTCGCTTCTGGCGCCAAGC1233000.16520900426322305No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCC1185290.15881636712340277No Hit
CCCCGCCCCTTGCCTCTCGGCGCCCC1158870.15527636558841953No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT1150220.1541173567588357No Hit
CGCTTCTGGCGCCAAGCGTCCGTCC1149340.15399944603397628No Hit
CTCGCCCGTCACGTTGAACGCACGTTCG1142710.15311109591372882No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCC1127840.15111867264252513No Hit
CGGGGCTACGCCTGTCTGAGCGTCGCT1127220.1510355991772833No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1117210.14969436468200764No Hit
TTCGGTTGGCCCCGGATAGCCGGGTCCC1089130.14593194064331233No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG1075840.14415122071901532No Hit
TGGGGAAGGTGGCTCGGGGGG1067560.14304178798965644No Hit
CCGGGGCTACGCCTGTCTGAGCGTCGCT1060640.14211458092598936No Hit
CCTCGGTTGGCCCCGGATAGCCGGGT1056790.14159872150472952No Hit
TTCGGTTGGCCCCGGATAGCCGGGTCCCCG1046760.14025480722025252No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCA1039020.1392177287993301No Hit
TCGGTTGGCCCCGGATAGCCGGGT1038910.13920298995872266No Hit
CTCGCCCGTCACGTTGAACGCACGTTC1010000.13532935466817136No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGG964760.1292676714947178No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCC963020.12903452983420036No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCC933930.1251367764408369No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCG912810.12230691904421137No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCC902280.12089601002970064No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG897750.12028903777559488No Hit
TGGGGGTGGGGGCCGGGCCG892380.11956951437503242No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC886810.11882319308245647No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCC873940.11709874873138779No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCC856250.11472847518279378No Hit
TCGCTTCTGGCGCCAAGCGTCCGTC848910.11374499254589836No Hit
CCCGGGGAGCCCGGCGGGTGCCGGCGCGG842700.1129129179988792No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAATA834630.1118316230561345No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCG823140.11029208415995898No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTT804850.10784141693532448No Hit
AGCCGCCTGGATACCGCAGCTAGGAATAATGGAAT780970.10464174862891266No Hit
TCCCGGGGAGCCCGGCGGGTGCCGGCGCGG778300.10428399677053243No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCC777440.10416876583487439No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGG774210.10373597987885638No Hit
GTCTAGCGGTTAGGATTCCTGGT770270.10320806140619045No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCGT767000.10276991587176974No Hit
TCGCTTCTGGCGCCAAGCGTCCGT757870.10154659210135349No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)