FastQCFastQC Report
Sat 30 Sept 2023
SRR17799032_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR17799032_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64278263
Total Bases3.2 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1584050.24643634194035394No Hit
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT974830.15165780070939378No Hit
CCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT857860.13346035813071053No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA837420.1302804339936815No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)