FastQCFastQC Report
Tue 19 Sept 2023
SRR17799046_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR17799046_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37801785
Total Bases1.8 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT648740.17161623452437497No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA589910.15605347736885972No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGAGGTTGATCTCGTAT495150.13098587804782233TruSeq Adapter, Index 5 (97% over 37bp)
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT415360.10987840918094212No Hit
CCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT382150.10109310975658953No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)