FastQCFastQC Report
Tue 19 Sept 2023
SRR17799048_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR17799048_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31514399
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT694580.22040083962889473No Hit
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT388950.123419773926198No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA317880.1008681777494789No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)