FastQCFastQC Report
Thu 21 Sept 2023
SRR17799060_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR17799060_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51997656
Total Bases7.7 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACCTCTGTATCTCGTAT32380196.227240320217511TruSeq Adapter, Index 8 (97% over 37bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACCTCTGTATCGCGTAT9954231.9143612935167693TruSeq Adapter, Index 8 (97% over 37bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1261830.24267055422652126No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACCTCTGTATCTCGTTT1157690.22264272835683208TruSeq Adapter, Index 8 (97% over 37bp)
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT834650.16051685099036No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACCTCTGTATCTCGGAT779930.149993299697971TruSeq Adapter, Index 8 (97% over 37bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)