FastQCFastQC Report
Tue 19 Sept 2023
SRR17799066_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR17799066_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33686024
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTACTCTCATCTCGTAT1507460.44750309505212016TruSeq Adapter, Index 18 (97% over 37bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTACTCTCATCGCGTAT651850.1935075507872345TruSeq Adapter, Index 18 (97% over 37bp)
GTGGGATTGGAGCCTTGAAGGTGATGCACGAGTTACGGATCTTCCATGCT416130.12353194309901341No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT376160.11166648815544393No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)