FastQCFastQC Report
Wed 20 Sept 2023
SRR17799070_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR17799070_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40223876
Total Bases6 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3436160.8542587989282783No Hit
CCACAGTTGAAGATTGTAGATCAGCGATTTTAAAGGAATTAGAAAATTTA1169790.29081981060204143No Hit
GAAAATAATTGGAAAACCATATCATAATTATTACTTCTTAGTTGACGTAT1106720.2751400685503307No Hit
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT869740.21622481135333654No Hit
CCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT790280.19647037495839534No Hit
GTGAAACATTGCAAGGGCTTGGCCATTTTTGGAATTCTTGAGTTGGATGG789660.1963162376494995No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT769900.19140373244985143No Hit
AAATAATTGGAAAACCATATCATAATTATTACTTCTTAGTTGACGTATTG752680.1871226929995508No Hit
CCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT726650.18065141211155286No Hit
CCGACGATGGCTTGAATCTTTTCGTTTTGGAAGAATCCAGTGAGGATTGG724110.18001994636220536No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAAGCACTGATCTCGTAT709640.17642258045942663TruSeq Adapter, Index 10 (97% over 37bp)
GTGCAATTGCCGGATGTTTAGGCGCTGGCGAGCTCGTCTTGGGCTCCGGT697040.1732901125689628No Hit
CCCAGAACTCCTCGAACTCAATCTTTCCGGAACCGTCCTCGTCAATCTCG553030.1374879934494627No Hit
CGACGATGGCTTGAATCTTTTCGTTTTGGAAGAATCCAGTGAGGATTGGG510580.1269345599613523No Hit
CCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT500460.1244186413064718No Hit
CACAGTTGAAGATTGTAGATCAGCGATTTTAAAGGAATTAGAAAATTTAA438460.10900491041688772No Hit
GTGACTGGTCCCCACAGTTGAAGATTGTAGATCAGCGATTTTAAAGGAAT432850.1076102163799431No Hit
CCAGCCATCAACTCCCAGAACTCCTCGAACTCAATCTTTCCGGAACCGTC402710.10011715429910335No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)