FastQCFastQC Report
Sat 23 Sept 2023
SRR17799071_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR17799071_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences84148628
Total Bases12.6 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4283830.5090790072061543No Hit
GAAAATAATTGGAAAACCATATCATAATTATTACTTCTTAGTTGACGTAT2405960.2859179118166965No Hit
CCACAGTTGAAGATTGTAGATCAGCGATTTTAAAGGAATTAGAAAATTTA2117080.25158817800333005No Hit
GTGCAATTGCCGGATGTTTAGGCGCTGGCGAGCTCGTCTTGGGCTCCGGT1670950.19857127082333415No Hit
AAATAATTGGAAAACCATATCATAATTATTACTTCTTAGTTGACGTATTG1517480.18033330264160694No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1430000.1699374112195864No Hit
GTGAAACATTGCAAGGGCTTGGCCATTTTTGGAATTCTTGAGTTGGATGG1422290.16902117524720664No Hit
CCGACGATGGCTTGAATCTTTTCGTTTTGGAAGAATCCAGTGAGGATTGG1416820.1683711349399541No Hit
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1339500.15918263099904612No Hit
CCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1258030.14950095205354982No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGGTACAGATCTCGTAT1194820.1419892431282421TruSeq Adapter, Index 10 (97% over 36bp)
CCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1143150.13584891722774137No Hit
CCCAGAACTCCTCGAACTCAATCTTTCCGGAACCGTCCTCGTCAATCTCG1091020.12965392614600918No Hit
CGACGATGGCTTGAATCTTTTCGTTTTGGAAGAATCCAGTGAGGATTGGG959980.1140814797360689No Hit
GTGACTGGTCCCCACAGTTGAAGATTGTAGATCAGCGATTTTAAAGGAAT903860.1074123276258289No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)