FastQCFastQC Report
Tue 19 Sept 2023
SRR17799072_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR17799072_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38719967
Total Bases5.8 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2549890.6585465323356293No Hit
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT991780.2561417472282453No Hit
CCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT976720.25225228110344206No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT910280.23509317557011347No Hit
CCACAGTTGAAGATTGTAGATCAGCGATTTTAAAGGAATTAGAAAATTTA878350.2268467842444184No Hit
CCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT860530.22224450759475078No Hit
GAAAATAATTGGAAAACCATATCATAATTATTACTTCTTAGTTGACGTAT752650.1943829136011402No Hit
GTGCAATTGCCGGATGTTTAGGCGCTGGCGAGCTCGTCTTGGGCTCCGGT711840.183843131891099No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAATGTGGATCTCGTAT637980.16476770241049019TruSeq Adapter, Index 2 (97% over 39bp)
CCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT631000.16296501492369558No Hit
GTGAAACATTGCAAGGGCTTGGCCATTTTTGGAATTCTTGAGTTGGATGG505090.1304469086970038No Hit
CCGACGATGGCTTGAATCTTTTCGTTTTGGAAGAATCCAGTGAGGATTGG505060.13043916075651613No Hit
AAATAATTGGAAAACCATATCATAATTATTACTTCTTAGTTGACGTATTG495010.12784360069315143No Hit
CCCGGTTCAAACCAATGCGATAAAAATGGTTTCCGCAACAACGAAGTCGT433150.11186734740760496No Hit
CCCAGAACTCCTCGAACTCAATCTTTCCGGAACCGTCCTCGTCAATCTCG390100.10074905280781878No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)