FastQCFastQC Report
Thu 21 Sept 2023
SRR17818678_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR17818678_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences115526952
Total Bases8.6 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAA11657701.0090892037037382No Hit
AGGCGTTAAGCTAACCATTACTAATAGATCGAACTGTAGGCACCATCAAT2367010.2048881199600938No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAAT2016490.17454714809752794No Hit
CACGAAGAACCTTACCAGGGCTTGACATCCAAACTGTAGGCACCATCAAT1990500.17229745661427992No Hit
ACACGAAGAACCTTACCAGGGCTTGACATCCAAACTGTAGGCACCATCAA1701410.14727385865767495No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCA1630240.14111339144479462No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCAACTGTAGGCACCATCAAT1407490.12183217644312126No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)