FastQCFastQC Report
Tue 19 Sept 2023
SRR17818679_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR17818679_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences79425027
Total Bases5.9 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAA4427500.5574439401827336No Hit
CACGAAGAACCTTACCAGGGCTTGACATCCAAACTGTAGGCACCATCAAT1898000.2389674982420843No Hit
AGGCGTTAAGCTAACCATTACTAATAGATCGAACTGTAGGCACCATCAAT1727240.21746797769423482No Hit
ACACGAAGAACCTTACCAGGGCTTGACATCCAAACTGTAGGCACCATCAA1300410.16372798966753893No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)