FastQCFastQC Report
Tue 19 Sept 2023
SRR17818680_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR17818680_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences129760506
Total Bases9.7 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAA19706641.5186932147135739No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAAT3607080.2779798038087182No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCA3243540.24996357520369103No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCAACTGTAGGCACCATCAAT2445690.18847722434127992No Hit
TCGTTTTTTCACTGACCCGGTGAGGCGGGGAACTGTAGGCACCATCAATC2258930.17408455543476378No Hit
GCAGCTAACGCGTTAAATGATCCGCCTGAGTAACTGTAGGCACCATCAAT1326750.10224605628464489No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)