FastQCFastQC Report
Sun 2 Jul 2023
SRR1795427.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1795427.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46820845
Total Bases2.3 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCAC8454581.8057299051309306No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCTGTAGGCACCATCAATA6658931.4222148276050977No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCCTGTAGGCACCATCAAT4975151.0625929540571086No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCTGTAGGCACCATCAAT4584340.9791237214962695No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCCTGTAGGCACCATCAA2679310.5722472544013248No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATA2672240.5707372432086606No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCTGTAGGCACCAT2452760.5238606864100808No Hit
GGGGGGGATGCGTGCATTTATCAGACTGTAGGCACCATCAATAGATCGGA2448200.5228867612278248No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCCTGTAGGCACCAT2426940.5183460486456406No Hit
ATGTGGCGTACGGAAGACCCGCTCCCCGGCGCCTGTAGGCACCATCAATA2394120.5113363502944042No Hit
TCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGCTGTAGGCACC2362880.5046641084756159No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAATA2240260.47847491859662084No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAAT2236280.47762486986298514No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCCTGTAGGCACCATCAATAG2120770.4529542343800074No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCACC1977520.42235888737163974No Hit
GGGGGGGGATGCGTGCATTTATCAGACTGTAGGCACCATCAATAGATCGG1915040.40901440373406334No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCTGTAGGCACCATCAATA1841810.3933739341953354No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCTGTAGGCACCATCAATAG1791180.3825603745511214No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCCTGTAGGCACCATCAATA1786060.3814668445219218No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCACCA1757630.37539476273869044No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATA1353950.28917675449898433No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGCTGTAGGCACC1353110.2889973472285688No Hit
TGGGGGGATGCGTGCATTTATCAGACTGTAGGCACCATCAATAGATCGGA1224860.2616057014776218No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCAC1222990.2612063067208633No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAATA1096130.23411153728643724No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCATCAATAGATCG1066960.22788140624117312No Hit
TTGGGGGGGCCGGGCCACCCCTCCCACGGCGCCTGTAGGCACCATCAATA1047410.22370591560233483No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCACCATCA1037120.22150817653974422No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCTGTAGGCACCATCAATA1021020.21806953719011266No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATAG923820.1973095530420265No Hit
GGGGGGGGGATGCGTGCATTTATCAGACTGTAGGCACCATCAATAGATCG906490.19360821018928642No Hit
ATTGGAGGGCAAGTCTGGTGCCAGCCTGTAGGCACCATCAATAGATCGGA898430.19188675471363237No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCCTGTAGGCACCATC871250.18608164803518604No Hit
TCGGGGGGGATGCGTGCATTTATCAGACTGTAGGCACCATCAATAGATCG849920.18152598484713378No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAATAG832930.17789725922289526No Hit
TCGCCCGTCACGCACCGCACGTTCGTGGGGACTGTAGGCACCATCAATAG819390.17500538488786352No Hit
ATGCGTGCATTTATCAGATCAAAACCAACCCGGCTGTAGGCACCATCAAT702560.15005282369423276No Hit
ACCGGGGTCCGGTGCGGAGTGCCCTTCGCTGTAGGCACCATCAATAGATC668470.14277187863653465No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCTGTAGGCACCATCAATAG658900.14072791723430023No Hit
AAATACATGCCGACGGGCGCTGACCCCCTGTAGGCACCATCAATAGATCG626700.13385063853503712No Hit
TGGGGGATGCGTGCATTTATCAGACTGTAGGCACCATCAATAGATCGGAA625740.13364560165456218No Hit
TGACCGGGGTCCGGTGCGGAGTGCCCTTCCTGTAGGCACCATCAATAGAT615710.13150339341376688No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCCTGTAGGCACCATCAAT609900.13026249312672594No Hit
TATTGGAGGGCAAGTCTGGTGCCAGCCTGTAGGCACCATCAATAGATCGG607290.12970504910793473No Hit
TGGGGGGGATGCGTGCATTTATCAGACTGTAGGCACCATCAATAGATCGG601230.12841075379993674No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCACCATCA592570.12656115027398587No Hit
ATTGAAAGTCAGCCCTCGACACAAGGGTTTGTCTGTAGGCACCATCAATA588950.12578799037052835No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGCTGTAGGCACCA584050.12474144795977091No Hit
TACCTGGTTGATCCTGCCAGTAGCCTGTAGGCACCATCAATAGATCGGAA575470.12290893084052627No Hit
TGGGCCGCCGGTGAAATACCACTACTCTCTGTAGGCACCATCAATAGATC564530.12057236472344743No Hit
CGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCCTGTAGGCACCATCAAT550580.11759292255404617No Hit
TTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCCTGTAGGCACCATC546370.11669375040113009No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCCCCTGTAGGCACCATCAATAGA540540.1154485785124126No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCCTGTAGGCACCATCAAT536220.11452591255027543No Hit
TCGGGCCGCCGGTGAAATACCACTACTCTCTGTAGGCACCATCAATAGAT525850.11231108708097857No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCCTGTAGGCACCATCAA524080.11193305033260292No Hit
AAAAGCATCGCGAAGGCCCGCGGCGGGTGTTCTGTAGGCACCATCAATAG521330.1113457051020758No Hit
GGGGGGATGCGTGCATTTATCAGACTGTAGGCACCATCAATAGATCGGAA501510.1071125478406039No Hit
TTGCGTGCATTTATCAGATCAAAACCAACCCGGCTGTAGGCACCATCAAT497410.10623686949690891No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCCTGTAGGCACCATCAATAGA482280.10300540282859055No Hit
TCGCTGAGAAGACGGTCGAACTTGACTATCTAGCTGTAGGCACCATCAAT482040.10295414360847181No Hit
TAACGGCGAGTGAACAGGGAAGAGCCCCTGTAGGCACCATCAATAGATCG477260.10193323080777375No Hit
TAGTGACGAAAAATAACAATACAGGACTGTAGGCACCATCAATAGATCGG473780.10118997211605216No Hit
TCTCAACCTATTCTCAAACTTTAAATGGGTCTGTAGGCACCATCAATAGA468680.10010071368852913No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)