FastQCFastQC Report
Fri 30 Jun 2023
SRR1795435.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1795435.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26252378
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCAC5821882.21765814891131No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCTGTAGGCACCATCAATA2273920.8661767707291126No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCAC1696940.6463947761227573No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCTGTAGGCACCATCAAT1649930.6284878268932437No Hit
GGGGGGGGATGCGTGCATTTATCAGACTGTAGGCACCATCAATAGATCGG1640880.6250405201387852No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCTGTAGGCACCATCAATAG1611120.613704404225781No Hit
GGGGGGGATGCGTGCATTTATCAGACTGTAGGCACCATCAATAGATCGGA1553880.5919006651511722No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCACC1326450.505268513199071No Hit
ATGTGGCGTACGGAAGACCCGCTCCCCGGCGCCTGTAGGCACCATCAATA1277530.4866340108313235No Hit
ATTGAAAGTCAGCCCTCGACACAAGGGTTTGTCTGTAGGCACCATCAATA1085430.4134596873471805No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCCTGTAGGCACCATCAA991900.37783243864612953No Hit
ATTGGAGGGCAAGTCTGGTGCCAGCCTGTAGGCACCATCAATAGATCGGA879090.3348610933455247No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCTGTAGGCACCAT843690.3213766006264271No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAAT815960.3108137479964672No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCCTGTAGGCACCATCAATA785750.2993062190404237No Hit
ATGTACACGGAGTCGACCCAACGCGACTGTAGGCACCATCAATAGATCGG781810.2978054026191456No Hit
TCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGCTGTAGGCACC747130.28459517076891094No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCCTGTAGGCACCATCAAT714930.2723296152447599No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAATA699850.26658537371357366No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCCTGTAGGCACCATC686680.2615686853206213No Hit
TCGGGGGGGATGCGTGCATTTATCAGACTGTAGGCACCATCAATAGATCG647840.2467738351169559No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCTGTAGGCACCATCAATA642870.2448806732860543No Hit
ATGTACACGGAGTCGAGCTCAACCCGCAACGCGACTGTAGGCACCATCAA588880.22431491730006328No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCACCA587500.2237892506347425No Hit
TCGCCCGTCACGCACCGCACGTTCGTGGGGACTGTAGGCACCATCAATAG564750.21512336901441842No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCCTGTAGGCACCAT562290.21418631104580316No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATA542630.2066974656543495No Hit
TCTCAACCTATTCTCAAACTTTAAATGGGTCTGTAGGCACCATCAATAGA528940.2014826999672182No Hit
ATGCTAACTAGTTACGCGACCCCCTGTAGGCACCATCAATAGATCGGAAG475360.18107312030932968No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCCTGTAGGCACCATCAATAG466900.1778505551001894No Hit
GGGGGGGGGATGCGTGCATTTATCAGACTGTAGGCACCATCAATAGATCG456010.17370235945863646No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGCTGTAGGCACC442010.16836950923074473No Hit
ACTTCGAACGCACTTGCGGCCCCGGGTCTGTAGGCACCATCAATAGATCG435920.16604971938161184No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAATAG428930.16338710344640017No Hit
AAAAAGCTCGTAGTTGGATCTTGGGCTGTAGGCACCATCAATAGATCGGA421640.16061021214916227No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATAG417400.1589951203658579No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATA411150.15661438365697766No Hit
TAGAACTGGCGCTGCGGGATGAACCGAACGCCGGGTTCTGTAGGCACCAT396000.15084347787465197No Hit
GTACAGTGAAACTGCGAATGGCTCATTCTGTAGGCACCATCAATAGATCG389210.14825704551412447No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCTGTAGGCACCATC388170.1478608909257668No Hit
AAGTCAGCCCTCGACACAAGGGTTTGTCTGTAGGCACCATCAATAGATCG385330.14677908416525162No Hit
ACCGGGGTCCGGTGCGGAGTGCCCTTCGCTGTAGGCACCATCAATAGATC378470.14416598755358467No Hit
AGTTTTATCCGGTAAAGCGAATGATTCTGTAGGCACCATCAATAGATCGG373220.14216616871812526No Hit
AGAACTGGCGCTGCGGGATGAACCGAACGCCGGGTTCTGTAGGCACCATC371400.14147289818849934No Hit
ACAGTGAAACTGCGAATGGCTCATTCTGTAGGCACCATCAATAGATCGGA348480.13274226052969373No Hit
TCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCA348030.13257084748665435No Hit
ATCTCGCGCCGGGCCGTACCCATATCCGCAGCCTGTAGGCACCATCAATA330800.1260076325276133No Hit
TCGGGCCGCCGGTGAAATACCACTACTCTCTGTAGGCACCATCAATAGAT330730.12598096827647387No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCATCAATAGATCG329640.12556576779444514No Hit
TCGCCCGTCACGCACCGCACGTTCGTGGGGCTGTAGGCACCATCAATAGA325030.12380973639797507No Hit
TGGGGGGATGCGTGCATTTATCAGACTGTAGGCACCATCAATAGATCGGA319520.12171087891542626No Hit
AAATACATGCCGACGGGCGCTGACCCCCCTGTAGGCACCATCAATAGATC313490.11941394413869859No Hit
TGGGCCGCCGGTGAAATACCACTACTCTCTGTAGGCACCATCAATAGATC304060.11582188859234009No Hit
TACCTGGTTGATCCTGCCAGTAGCCTGTAGGCACCATCAATAGATCGGAA299220.11397824608498322No Hit
TAAAAAGCTCGTAGTTGGATCTTGGGCTGTAGGCACCATCAATAGATCGG289330.11021096831685114No Hit
ACGGGGTCGGCGGCGACGTCGGCTACCCCTGTAGGCACCATCAATAGATC284210.10826066880493646No Hit
TCGCGCCGGGCCGTACCCATATCCGCAGCCTGTAGGCACCATCAATAGAT283700.10806640068949183No Hit
CCCCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCATCAATAGATCGG278910.106241804075806No Hit
AAGCCATGCATGTCTAAGTACGCACGGCCTGTAGGCACCATCAATAGATC269070.10249357220134495No Hit
AGTCAGCGGAGGAGAAGAAACTAACCCTGTAGGCACCATCAATAGATCGG265510.10113750457196677No Hit
GCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCAC264780.10085943452436956No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)