FastQCFastQC Report
Fri 30 Jun 2023
SRR1795437.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1795437.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41912080
Total Bases2 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATA10193382.4320864056377065No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCCTGTAGGCACCATCAA9815202.3418546633810586No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCAC8716302.0796629515881815No Hit
TCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCAC6297061.502445118447951No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAAT4389991.0474283309251176No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCCTGTAGGCACCATCAAT4250651.014182545939023No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAAT3866300.9224786744060423No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCACCA3641460.8688330428840563No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCATCAATAGATCG3287750.7844397128465112No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATA3094270.7382764110013151No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCTGTAGGCACCAT2935430.7003780294368592No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATAG2696100.6432751607651064No Hit
TCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCA2420020.5774039370033651No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAATA2235540.5333879874251052No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCCTGTAGGCACCATCAATA1547360.36919188930733093No Hit
CCCCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCATCAATAGATCGG1402850.33471256974122976No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCACC1348500.3217449479959No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCTGTAGGCACCATC1291520.3081498221992323No Hit
TCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATAGATC1265730.3019964649809792No Hit
AAATACATGCCGACGGGCGCTGACCCCCCTGTAGGCACCATCAATAGATC1140230.27205283059203933No Hit
CCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATAGATC1119590.26712823605986624No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCCTGTAGGCACCATCAAT1118140.26678227375019326No Hit
TAGCCTCGGTTGGCCTCGGATAGCCGGTCCCCCTGTAGGCACCATCAATA1111780.26526481148155856No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAATAG1033850.24667112679685665No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCCTGTAGGCACCATCAATAG1029140.2455473457771602No Hit
AGGGGGACGGCGGAGCGAGCGCCTGTAGGCACCATCAATAGATCGGAAGA931720.22230345046106037No Hit
ATTGAAAGTCAGCCCTCGACACAAGGGTTTGTCTGTAGGCACCATCAATA898170.21429859839931592No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCCCTGTAGGCACCATCAATAGATCGG884680.21107995594587528No Hit
TACCTGGTTGATCCTGCCAGTAGCCTGTAGGCACCATCAATAGATCGGAA867190.20690693470712976No Hit
ATTTATCAGATCAAAACCAACCCGGTCTGTAGGCACCATCAATAGATCGG793730.18937976831500608No Hit
ATGCTAACTAGTTACGCGACCCCCTGTAGGCACCATCAATAGATCGGAAG785680.18745908100958006No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCATCAATAGATCG757380.1807068511035482No Hit
TAGGGGGACGGCGGAGCGAGCGCCTGTAGGCACCATCAATAGATCGGAAG693670.1655059830006051No Hit
ACGGGGTCGGCGGCGACGTCGGCTACCCCTGTAGGCACCATCAATAGATC680300.16231597191072358No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTCTGTAGGCACCATCAAT679970.16223723566093595No Hit
TCGGGGGGGATGCGTGCATTTATCCTGTAGGCACCATCAATAGATCGGAA678810.16196046581319753No Hit
ACTTCGAACGCACTTGCGGCCCCGGGTCTGTAGGCACCATCAATAGATCG665810.15885873476095674No Hit
TCCTACTTGGATAACTGTGGTAATTCTCTGTAGGCACCATCAATAGATCG664650.15858196491321833No Hit
ATTTATCAGATCAAAACCAACCCGGCTGTAGGCACCATCAATAGATCGGA655340.1563606482904213No Hit
ACAGTGAAACTGCGAATGGCTCATTCTGTAGGCACCATCAATAGATCGGA641500.15305849769326646No Hit
ATTGGAGGGCAAGTCTGGTGCCAGCCTGTAGGCACCATCAATAGATCGGA622490.14852281251610513No Hit
AGCCTCGGTTGGCCTCGGATAGCCGGTCCCCCTGTAGGCACCATCAATAG622010.14840828706186854No Hit
AAGTCCTTCTGATCGAGGCCCCTGTAGGCACCATCAATAGATCGGAAGAG618120.1474801536931596No Hit
ATGTACACGGAGTCGACCCAACGCGACTGTAGGCACCATCAATAGATCGG586840.1400169115920756No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAATA574860.13715854713008754No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATAGA565330.13488473967409872No Hit
CCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAAT551240.13152294040286236No Hit
ATGTGGCGTACGGAAGACCCGCTCCCCGGCGCCTGTAGGCACCATCAATA538970.12859538347893973No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGCTGTAGGCACC536580.12802514215472005No Hit
AAATACATGCCGACGGGCGCTGACCCCCTGTAGGCACCATCAATAGATCG533700.12733798942930058No Hit
CCGCGAGGGGGGCCCGGGCCTGTAGGCACCATCAATAGATCGGAAGAGCA526450.1256081778809355No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCCCCTGTAGGCACCATCAATAGA526360.12558670435826616No Hit
TAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCACC509290.12151389289197767No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCCCCCCCTGTAGG507220.12102000187058243No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGCTGTAGGCACCATCA504310.12032569130427312No Hit
AGTTTTATCCGGTAAAGCGAATGATTCTGTAGGCACCATCAATAGATCGG497700.11874858036155687No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCCTGTAGGCACCATC486940.1161813014290868No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGCTGTAGGCACCATCAATAGATC480400.11462089211511335No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCTCCTGTAGGCACCATCAATAGA453850.10828620292765237No Hit
TCGCGCCGTCGGGCCCGGGGGCTGTAGGCACCATCAATAGATCGGAAGAG440190.10502699937583626No Hit
TTCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCCTGTAGGCACCATCA427200.10192765427055875No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCCTGTAGGCACCAT423150.10096134575043758No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)