FastQCFastQC Report
Tue 19 Sept 2023
SRR18017747_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18017747_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35225531
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length35-51
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACTCGCCGAATCCCGGGGCCGAGGGAGCGNNNNN563361015.99297395971121No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGANNNN27520667.812702667278458No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTNN10841563.0777563012463887No Hit
ACTCGCCGAATCCCGGGGCCGAGGGAGCGNNNNNN5824821.6535790475379917No Hit
ACTCGCCGAATCCCGGGGCCGAGGGAGCGANNNNN4163171.1818615310582543No Hit
GGCATGCTCATAAGGAAAGGTTAAAANNNNNNNNN3231030.9172409636635428No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCNNNNNN3019140.8570885702191402No Hit
AGGCATGCTCATAAGGAAAGGTTAAAANNNNNNNN2842380.8069090569564445No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATTNNN2707100.7685050936492626No Hit
TCACTCGCCGAATCCCGGGGCCGAGGGAGCGNNNN2343480.6652788285860048No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTNNNNN2193330.6226534952730733No Hit
GGCATGCTCATAAGGAAAGGTTAAAAANNNNNNNN2169010.6157494119818946No Hit
GCACTCGCCGAATCCCGGGGCCGAGGGAGCGNNNN2016270.5723888165092529No Hit
TCGACTGCATAATTTGTGGTAGTGGGGNNNNNNNN1897100.5385582406124694No Hit
ACTTTGCAAGGAGAGCCAAAGCTAAGACNNNNNNN1710980.48572156371468184No Hit
TGAACCCCATTCGTGATGGGGATCGGGGATTNNNN1696150.4815115491090822No Hit
CGCCACGCAGTTTTATCCGGTAAAGCGNNNNNNNN1567440.4449727102765321No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTNNNN1507190.4278686388006472No Hit
CCCCCTTGTAAATTTAACTGTTAGTCCANNNNNNN1478590.4197495276934221No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCNNNNN1380790.3919855743267575No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATNNN1309900.3718609664109819No Hit
TCACTCGCCGAATCCCGGGGCCGAGGGAGCGANNN1306170.3708020753469976No Hit
GTTGAAACCCATTCGTGATGGGGATCGGGGATTNN1295370.367736117306507No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1280330.3634664868501202No Hit
AGGCATGCTCATAAGGAAAGGTTAAAAANNNNNNN1258020.3571330124164771No Hit
CGACTGCATAATTTGTGGTAGTGGGGNNNNNNNNN1235620.3507739883324967No Hit
CGACTGCATAATTTGTGGTAGTGGGGGNNNNNNNN1221740.3468336644804588No Hit
GAACCCCATTCGTGATGGGGATCGGGGATTNNNNN1205420.342200661219273No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTTNNNN1121340.3183316101040464No Hit
CACTCGCCGATTCCCGGGGCCGAGGGAGCGNNNNN1118580.31754808749369884No Hit
GCACGAGCGCACGTGTTAGGACCCGAAANNNNNNN1116040.31682701958417603No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGGNNNN1108820.31477736985710736No Hit
GGGGGGGCCCAAGTCCTTCTGATCGAGGCNNNNNN958710.2721633919443258No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCTGGGNNN906140.25723955729723424No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTTNNNN903770.2565667498383488No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGAGNNN877470.24910057423974674No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGNNNNNNN828580.2352214364064519No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCNNNN790290.2243514796128978No Hit
GCACTCGCCGAATCCCGGGGCCGAGGGAGCNNNNN756110.21464829018475262No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGNNNNN752530.21363198187133078No Hit
AGCACTCGCCGAATCCCGGGGCCGAGGGAGNNNNN720270.20447385165038393No Hit
CGCCGGGTTAAGGCGCCCGATGCCGACGCTCNNNN658920.18705750667037496No Hit
CCACTCGCCGAATCCCGGGGCCGAGGGAGCGNNNN631000.17913143736569934No Hit
GACTGCATAATTTGTGGTAGTGGGGGNNNNNNNNN618530.17559139136894772No Hit
CACGAGCGCACGTGTTAGGACCCGAAANNNNNNNN608020.1726077599795444No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGNNNNN598090.16978878189231555No Hit
GCACTCGCCGAATCCCGGGGCCGAGGGAGCGANNN593860.16858794832645674No Hit
CTAAACCATTCGTAGACGACCTGCTTNNNNNNNNN572010.1623850609945383No Hit
ACGATTAAAGTCCTACGTGATCTGAGTTNNNNNNN568260.16132049223047906No Hit
CAGGCATGCTCATAAGGAAAGGTTAAAANNNNNNN551560.15657961266786866No Hit
GTTTAAACCCAATACTTAATGGGAAACGGGAATAAATACGAAAAACAAAA545810.15494727389631116No Hit
AACCCCATTCGTGATGGGGATCGGGGATTNNNNNN543590.1543170491879881No Hit
CACTCGCCGATTCCCGGGGCCGAGGGAGCGANNNN486750.1381810255748877No Hit
AGCACTCGCCGAATCCCGGGGCCGAGGGAGCGNNN468160.13290360335519144No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCNNNNNN458260.13009314181807508No Hit
GGGGGGGGCCCAAGTCCTTCTGATCGAGGCNNNNN452060.12833305479483048No Hit
TTAACCAGTGAAATTGACCTGCCCGTGANNNNNNN450350.12784761143841947No Hit
AGCACTCGCCGAATCCCGGGGCCGAGGGAGCNNNN447760.12711234927870924No Hit
GCATGCTCATAAGGAAAGGTTAAAAANNNNNNNNN444850.12628624391779927No Hit
ACGATTAAAGTCCTACGTGATCTGAGTNNNNNNNN443730.12596829271360024No Hit
ACCCCATTCGTGATGGGGATCGGGGATTNNNNNNN442130.12551407670760165No Hit
GCACTCGCCGAATCCCGGGGCCGAGGGAGNNNNNN440170.12495766210025336No Hit
GACTGCATAATTTGTGGTAGTGGGGNNNNNNNNNN411700.11687545604351572No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATNNNN406410.11537370437368283No Hit
AAGGACCTGGCGGTGCTTCATATCCCTCTAGNNNN400890.11380665915298764No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTNNN392440.11140783087130751No Hit
AGCCTGGTGATAGCTGGTTGTCCAAGATANNNNNN391990.11128008261962041No Hit
CGCCGGGTTAAGGCGCCCGATGCCGACGCTNNNNN383940.10899480833943993No Hit
GGGGGGGCCCAAGTCCTTCTGATCGAGGCCNNNNN383600.10889828743816524No Hit
AGCACGAGCGCACGTGTTAGGACCCGAAANNNNNN364760.10354989396753167No Hit
TTAACCAGTGAAATTGACCTGCCCGTGNNNNNNNN363370.10315529381232039No Hit
TAACCAGTGAAATTGACCTGCCCGTGANNNNNNNN357950.10161663709200011No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)