FastQCFastQC Report
Tue 19 Sept 2023
SRR18017755_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18017755_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40365518
Total Bases1.4 Gbp
Sequences flagged as poor quality0
Sequence length35-51
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACTCGCCGAATCCCGGGGCCGAGGGAGCGNNNNN37817069.36865470176798No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGANNNN26994016.687393433177298No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN12390653.0696125341436225No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTNN10434752.585065302518848No Hit
CGACTGCATAATTTGTGGTAGTGGGGNNNNNNNNN8405232.082279731923668No Hit
TCGACTGCATAATTTGTGGTAGTGGGGNNNNNNNN6695471.6587102883208384No Hit
CGACTGCATAATTTGTGGTAGTGGGGGNNNNNNNN5544131.3734816929637816No Hit
GACTGCATAATTTGTGGTAGTGGGGGNNNNNNNNN4333601.0735895919878942No Hit
GACTGCATAATTTGTGGTAGTGGGGNNNNNNNNNN3847310.9531179557760165No Hit
GCACTCGCCGAATCCCGGGGCCGAGGGAGCGNNNN3720850.921789236050433No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGNNNNNNN3455090.8559508638041012No Hit
ACTCGCCGAATCCCGGGGCCGAGGGAGCGNNNNNN2935800.7273039330252122No Hit
ACTCGCCGAATCCCGGGGCCGAGGGAGCGANNNNN2323370.5755828526714312No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGNNNNN2280740.5650218585080464No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGAGNNN1782130.4414981123244845No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATTNNN1734940.4298074410936582No Hit
AGCACTCGCCGAATCCCGGGGCCGAGGGAGCGNNN1658570.4108878275760019No Hit
GCACGAGCGCACGTGTTAGGACCCGAAANNNNNNN1403580.34771757419290394No Hit
GCACTCGCCGAATCCCGGGGCCGAGGGAGCNNNNN1351280.3347609709851859No Hit
ACTTTGCAAGGAGAGCCAAAGCTAAGACNNNNNNN1342980.3327047605334831No Hit
GTTGAAACCCATTCGTGATGGGGATCGGGGATTNN1288840.3192923227196044No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCNNNNNN1266620.3137876243778167No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCNNNN1263180.3129354118532555No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCTGGGNNN1155950.28637065923444854No Hit
TGACTGCATAATTTGTGGTAGTGGGGGNNNNNNNN1153280.28570920358311763No Hit
CGACTGCATAATTTGTGGTAGTGGGGGANNNNNNN1121760.2779005585906268No Hit
GCACTCGCCGAATCCCGGGGCCGAGGGAGCGANNN1060380.2626945106959856No Hit
TGACTGCATAATTTGTGGTAGTGGGGNNNNNNNNN1022160.25322603317019243No Hit
CGCCACGCAGTTTTATCCGGTAAAGCGNNNNNNNN1019230.25250016610712145No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCNNNNN911380.22578181704493425No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTNNNNN888990.22023500354931652No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCNNNN865520.21442063495877842No Hit
TGAACCCCATTCGTGATGGGGATCGGGGATTNNNN836350.20719417003393836No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCGNNNNNNN793700.19662822114657366No Hit
TCACTCGCCGAATCCCGGGGCCGAGGGAGCGNNNN792300.19628139046797322No Hit
CACTCGCCGATTCCCGGGGCCGAGGGAGCGNNNNN767330.19009541757893458No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGGNNN762680.18894344425358298No Hit
AACTTTGCAAGGAGAGCCAAAGCTAAGACNNNNNN738670.1829952981155847No Hit
AGCACTCGCCGAATCCCGGGGCCGAGGGAGCNNNN738570.18297052449568466No Hit
ACTGCATAATTTGTGGTAGTGGGGGNNNNNNNNNN714630.1770397198916164No Hit
GACTGCATAATTTGTGGTAGTGGGGGANNNNNNNN662280.16407072987394836No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCNNNNNNNN655940.16250008237228616No Hit
GAACCCCATTCGTGATGGGGATCGGGGATTNNNNN652500.16164786984772497No Hit
TCACTCGCCGAATCCCGGGGCCGAGGGAGCGANNN627990.15557585561022652No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCTNNNNNN623940.15457252400427512No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCTTNNNNN612260.1516789651999511No Hit
GGCATGCTCATAAGGAAAGGTTAAAANNNNNNNNN610000.15111908139021032No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTNNNN595710.14757893110649542No Hit
CTCGACTGCATAATTTGTGGTAGTGGGGNNNNNNN570700.14138304876949678No Hit
CACGAGCGCACGTGTTAGGACCCGAAANNNNNNNN526590.13045540503159156No Hit
GTTTAAACCCAATACTTAATGGGAAACGGGAATAAATACGAAAAACAAAA504370.12495070668980392No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTTNNNN503580.12475499509259365No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGGNNNN485460.12026601516670737No Hit
ACGATTAAAGTCCTACGTGATCTGAGTTNNNNNNN485200.1202016037549673No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTTNNNN481060.11917597589110587No Hit
CACTCGCCGATTCCCGGGGCCGAGGGAGCGANNNN480650.11907440404951572No Hit
ACTGCATAATTTGTGGTAGTGGGGNNNNNNNNNNN473670.11734520538049331No Hit
GGCATGCTCATAAGGAAAGGTTAAAAANNNNNNNN436800.10821117172335061No Hit
CGACTGCATAATTTGTGGTAGTGGGNNNNNNNNNN421250.10435887382889526No Hit
GTCCGGTGCGGAGTGCCCTTCGTCCTGGGANNNNN417260.10337040639488387No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)