FastQCFastQC Report
Fri 30 Jun 2023
SRR1802137.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1802137.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24780933
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAATAGA14019705.657454463074493No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAAT13541845.464620722714516No Hit
CTAAACCATTCGTAGACGACCTGCTTCTGTAGGCACCATCAATAGATCGG7424502.996053457712831No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAATAG6512772.6281375281552153No Hit
ACCTCTAGCATCACCAGTATTAGAGGCCTGTAGGCACCATCAATAGATCG4824391.946815319665325No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCCTGTAGGCACCATCAA2759441.1135335380633167No Hit
ATGTACACGGAGTCGACCCAACGCGACTGTAGGCACCATCAATAGATCGG2585121.0431891325479956No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAATA2578761.04062264322332No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCTGTAGGCACCATCAAT2398980.9680749308349286No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAATA2281780.9207805049148069No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTGCTGTAGGCACCATCAA2052000.8280559896594692No Hit
CGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAATAGATCG1845600.7447661474247156No Hit
ATGCTAAGACTTCACCAGTCAAAGCGACTGTAGGCACCATCAATAGATCG1809380.7301500714278999No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATCTGTAGGCACCATCAATA1749700.7060670395259129No Hit
GCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAATAGAT1679840.6778760105602158No Hit
ATGTACACGGAGTCGAGCTCAACCCGCAACGCGACTGTAGGCACCATCAA1512620.6103967110520012No Hit
ATTGATCATCGACACTTCGAACGCACCTGTAGGCACCATCAATAGATCGG1505530.6075356404054681No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAATAG1412110.5698373019288661No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCAATAGAT1220240.4924108386072469No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGACTGTAGGCACCATCAATA1115480.45013640124042137No Hit
CGTTGAACCCCATTCGTGATGGGGATCGGGGATTGCTGTAGGCACCATCA1110840.4482639939343688No Hit
GCGGGACATGTGGCGTACGGAAGACCCGCTCCCCGGCGCTGTAGGCACCA985470.3976726784257881No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT982450.39645399953262456No Hit
CGGGACATGTGGCGTACGGAAGACCCGCTCCCCGGCGCTGTAGGCACCAT966930.3901911199227245No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAACTGTAGGCACCATCAAT938590.3787549080577394No Hit
CGCCACGCAGTTTTATCCGGTAAAGCGACTGTAGGCACCATCAATAGATC862080.34788036431073843No Hit
GGCGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCA832800.33606482855185477No Hit
CGGCGGGGCGCGGGACATGTGGCGTACCTGTAGGCACCATCAATAGATCG828660.3343941892744716No Hit
GCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAATAGA815570.32911190228390513No Hit
CGTTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAA811740.32756635918429705No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAACTGTAGGCACCATCAA799380.32257865351558795No Hit
CGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAATAGATCGG795700.32109364082458075No Hit
GGCGGGGCGCGGGACATGTGGCGTACCTGTAGGCACCATCAATAGATCGG794390.3205650085894668No Hit
TCGTTTTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCAATAGA754810.3045930514399922No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCCCTGTAGGCACCATCAATAGATC733020.2958000007505771No Hit
ATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGCTGTAGGCACCATC700010.28247927549781926No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGCTGTAGGCACCATCAATAGA698260.2817730873974761No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGACTGTAGGCACCATCAAT680710.274691029591178No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATCTGTAGGCACCATCAATAG631890.2549903992718918No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATCTGTAGGCACCATCA611810.24688739524052628No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAATAGATC591670.23876017904572036No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAATCTGTAGGCACCATCAA547630.2209884510805142No Hit
AGTCAGAATCCCGCCCAGGCGGAACGATACCTGTAGGCACCATCAATAGA528550.21328898310648756No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCCTGTAGGCACCATCAATAGATCG516600.20846672722128742No Hit
AAGTCAGAATCCCGCCCAGGCGGAACGATACCTGTAGGCACCATCAATAG512520.20682030010734462No Hit
AGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCTGTAGGCACCATCAA506750.20449189705649906No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAATA502800.20289792963001033No Hit
CGGCGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATC479100.19333412507107783No Hit
CGCCGCGACCGGCTCCGGGACGGCTGGGAAGGCCCCTGTAGGCACCATCA471410.19023093279014153No Hit
CGGCGGGGCGCGGGACATGTGGCGTACGCTGTAGGCACCATCAATAGATC469700.18954088613209197No Hit
CCCCGAGAGAGGGGCCCGTGCCTTGGAAAGCGTCGCGCTGTAGGCACCAT467690.1887297786568407No Hit
CGCCACGCAGTTTTATCCGGTAAAGCGAATGCTGTAGGCACCATCAATAG461680.18630452695223382No Hit
AAACCTGCATTAAAAATTTCGGTTGGGCTGTAGGCACCATCAATAGATCG450060.18161543796595553No Hit
TGCAGTTAAAAAGCTCGTAGTTGGATCTTGCTGTAGGCACCATCAATAGA442250.17846382135813854No Hit
GTTTTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCAATAGATC439430.17732584967644277No Hit
GGCGGGGCGCGGGACATGTGGCGTACGCTGTAGGCACCATCAATAGATCG433310.17485620900552856No Hit
GCGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAA420180.1695577805726685No Hit
GTCCGGTGCGGAGTGCCCTTCGTCCTGGGACTGTAGGCACCATCAATAGA419690.16936004790457246No Hit
TTTTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCAATAGATCG403160.16268959687676005No Hit
GCAGTTAAAAAGCTCGTAGTTGGATCTTGCTGTAGGCACCATCAATAGAT387850.15651145983890113No Hit
TGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGCTGTAGGCACCATCAA387220.15625723212277762No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCAATA381970.15413866782174826No Hit
TGGATAACTGTGGTAATTCTAGAGCTAATACATGCTGTAGGCACCATCAA379630.1531943934475752No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATAG376960.15211695217448026No Hit
CCCCGAGAGAGGGGCCCGTGCCTTGGAAAGCGTCGCCTGTAGGCACCATC337460.13617727790959283No Hit
CCGTTGAACCCCATTCGTGATGGGGATCGGGGATTGCTGTAGGCACCATC331540.1337883444501464No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCCTGTAGGCACCATCAATA328080.13239210969175375No Hit
TGCAGTTAAAAAGCTCGTAGTTGGATCTTGGCTGTAGGCACCATCAATAG326040.13156889613478234No Hit
AAACATCACCTCTAGCATCACCAGTATTAGAGGCCTGTAGGCACCATCAA310640.12535444085176292No Hit
CGCCACGCAGTTTTATCCGGTAAAGCGAATCTGTAGGCACCATCAATAGA306290.12359905900233863No Hit
CCTCTAGCATCACCAGTATTAGAGGCCTGTAGGCACCATCAATAGATCGG304720.1229655073923165No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTCTGTAGGCACCATC300260.12116573657658491No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCTGGCTGTAGGCACCATCAATAG299630.12091150886046138No Hit
CTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGCTGTAGGCACCATCAATA299520.12086711989415411No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAATTCTGTAGGCACCATCA287210.11589959102831196No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATCTGTAGGCACCATCAA286970.11580274237455061No Hit
ATAAGGCCTACTTCACAAAGCGCCTTCCCTGTAGGCACCATCAATAGATC286180.11548394888925288No Hit
CGGCGGGGCGCGGGACATGTGGCGTACGGAAGCTGTAGGCACCATCAATA276830.11171088675313394No Hit
TGCTAAGACTTCACCAGTCAAAGCGACTGTAGGCACCATCAATAGATCGG272850.11010481324492505No Hit
CCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTGCTGTAGGCACCAT271130.1094107312263021No Hit
ATTGATCATCGACACTTCGAACGCACTCTGTAGGCACCATCAATAGATCG268380.10830100706862006No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCCCCTGTAGGCACCATCAATAGAT267640.10800239038618925No Hit
CGGCGGGGCGCGGGACATGTGGCGTACTGTAGGCACCATCAATAGATCGG266760.107647278655731No Hit
TAAGTCAGAATCCCGCCCAGGCGGAACGATACCTGTAGGCACCATCAATA266110.10738498021846068No Hit
ACCTCTAGCATCACCAGTATTAGAGGCTGTAGGCACCATCAATAGATCGG262970.10611787699841649No Hit
TGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAATAG262570.10595646257548091No Hit
CGGGACATGTGGCGTACGGAAGACCCGCTGTAGGCACCATCAATAGATCG260340.10505657716761511No Hit
CACCTCTAGCATCACCAGTATTAGAGGCCTGTAGGCACCATCAATAGATC252730.10198566777126591No Hit
AACATCACCTCTAGCATCACCAGTATTAGAGGCCTGTAGGCACCATCAAT248800.10039977106592396No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAATAG248510.10028274560929566No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)