FastQCFastQC Report
Fri 30 Jun 2023
SRR1802138.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1802138.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33706506
Total Bases1.7 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAAT22801626.76475336838532No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAATAGA14606874.333546170582023No Hit
CTAAACCATTCGTAGACGACCTGCTTCTGTAGGCACCATCAATAGATCGG9507102.820553397020741No Hit
GCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAATAGAT7404462.1967450438203238No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCCTGTAGGCACCATCAA4535631.3456244916040838No Hit
ACCTCTAGCATCACCAGTATTAGAGGCCTGTAGGCACCATCAATAGATCG4528551.3435240069083398No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTGCTGTAGGCACCATCAA4360951.2938006686305605No Hit
ATGTACACGGAGTCGAGCTCAACCCGCAACGCGACTGTAGGCACCATCAA4353631.2916289810637744No Hit
ATGTACACGGAGTCGACCCAACGCGACTGTAGGCACCATCAATAGATCGG3883491.1521484902647579No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCTGTAGGCACCATCAAT3724351.1049350531912148No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAATAG3455801.025262007281324No Hit
GGCGGGGCGCGGGACATGTGGCGTACCTGTAGGCACCATCAATAGATCGG2945110.8737511980624749No Hit
CGTTGAACCCCATTCGTGATGGGGATCGGGGATTGCTGTAGGCACCATCA2857480.8477532497732041No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAATA2802960.8315783309014587No Hit
CGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAATAGATCG2603100.7722841400410948No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATCTGTAGGCACCATCAATA2364740.70156782195105No Hit
ATTGATCATCGACACTTCGAACGCACCTGTAGGCACCATCAATAGATCGG2318360.6878078671221515No Hit
ATGCTAAGACTTCACCAGTCAAAGCGACTGTAGGCACCATCAATAGATCG1785970.529859131646573No Hit
CGTTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAA1742570.5169832791331146No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAATA1710120.507356057610955No Hit
ATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGCTGTAGGCACCATC1589320.47151727918639796No Hit
CGGCGGGGCGCGGGACATGTGGCGTACCTGTAGGCACCATCAATAGATCG1578080.46818261139258993No Hit
CGGCGGGGCGCGGGACATGTGGCGTACTGTAGGCACCATCAATAGATCGG1330410.39470421526336785No Hit
CGGGACATGTGGCGTACGGAAGACCCGCTCCCCGGCGCTGTAGGCACCAT1325210.3931614863907876No Hit
CGCCACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAATAGATCGG1305250.3872397809491141No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGACTGTAGGCACCATCAATA1247850.37021042762486267No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCAATAGAT1241510.3683294851148321No Hit
TTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCTGTAGGCACCATC1212130.35961306698475365No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAACTGTAGGCACCATCAA1148600.34076507366263353No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAACTGTAGGCACCATCAAT1111260.32968709364298987No Hit
GCGGGACATGTGGCGTACGGAAGACCCGCTCCCCGGCGCTGTAGGCACCA1079720.32032984967353184No Hit
TTTTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCAATAGATCG1050690.3117172690637232No Hit
GGCGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCA975410.28938330184683037No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATCTGTAGGCACCATCA960280.2848945541848805No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAATAG949810.28178832893566597No Hit
TGGATAACTGTGGTAATTCTAGAGCTAATACATGCTGTAGGCACCATCAA934170.27714827517275153No Hit
GGCGGGGCGCGGGACATGTGGCGTACTGTAGGCACCATCAATAGATCGGA932950.27678632724495383No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGACTGTAGGCACCATCAAT910510.2701288588025113No Hit
AAACCATTCGTAGACGACCTGCTTCTGTAGGCACCATCAATAGATCGGAA871190.2584634550967697No Hit
TCGTTTTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCAATAGA851860.25272865719158194No Hit
CCGTTGAACCCCATTCGTGATGGGGATCGGGGATTGCTGTAGGCACCATC838570.24878579820762198No Hit
GGCGGGGCGCGGGACATGTGGCGTACGCTGTAGGCACCATCAATAGATCG827740.24557276865184424No Hit
GCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAATAGA818830.24292936206440383No Hit
AAACATCACCTCTAGCATCACCAGTATTAGAGGCCTGTAGGCACCATCAA793560.2354322931009224No Hit
AAGTCAGAATCCCGCCCAGGCGGAACGATACCTGTAGGCACCATCAATAG778570.23098508044708047No Hit
AGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCTGTAGGCACCATCAA772380.22914863973145125No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAAT762960.22635392704304624No Hit
TTGGATAACTGTGGTAATTCTAGAGCTAATACATGCTGTAGGCACCATCA750500.22265731132144043No Hit
CGCCACGCAGTTTTATCCGGTAAAGCGACTGTAGGCACCATCAATAGATC745340.22112644959403388No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAATCTGTAGGCACCATCAA733900.21773244607435727No Hit
AGTCAGAATCCCGCCCAGGCGGAACGATACCTGTAGGCACCATCAATAGA728350.21608587968150716No Hit
CGCGCGCTACACTGACTGGCTCAGCGCTGTAGGCACCATCAATAGATCGG683440.20276204243774185No Hit
CGCCGCGACCGGCTCCGGGACGGCTGGGAAGGCCCCTGTAGGCACCATCA667720.19809825438447995No Hit
CGCCACGCAGTTTTATCCGGTAAAGCGAATGATTAGCTGTAGGCACCATC659600.19568922391422No Hit
TGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGCTGTAGGCACCATCAA659320.19560615389800415No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATCTGTAGGCACCATCAATAG648480.19239015755593297No Hit
CCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTGCTGTAGGCACCAT646580.1918264681601825No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTCTGTAGGCACCATC641250.1902451710657877No Hit
CGGCGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATC609810.18091759495926393No Hit
CCCCGAGAGAGGGGCCCGTGCCTTGGAAAGCGTCGCGCTGTAGGCACCAT608230.18044884272490302No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAATAGATC605990.17978428259517615No Hit
AAACCTGCATTAAAAATTTCGGTTGGGCTGTAGGCACCATCAATAGATCG590450.17517389669519587No Hit
ATTGATCATCGACACTTCGAACGCACTGTAGGCACCATCAATAGATCGGA587830.1743965986863189No Hit
TGCTAAGACTTCACCAGTCAAAGCGACTGTAGGCACCATCAATAGATCGG572780.1699315853147164No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCCCTGTAGGCACCATCAATAGATC563670.1672288430014075No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGGCTGTAGGCACCATCAATA562430.16686096150102298No Hit
CCCCGAGAGAGGGGCCCGTGCCTTGGAAAGCGTCGCCTGTAGGCACCATC536760.1592452210858046No Hit
AACATCACCTCTAGCATCACCAGTATTAGAGGCCTGTAGGCACCATCAAT522120.15490184595223247No Hit
TAAGTCAGAATCCCGCCCAGGCGGAACGATACCTGTAGGCACCATCAATA515690.1529942023655611No Hit
TGCAGTTAAAAAGCTCGTAGTTGGATCTTGCTGTAGGCACCATCAATAGA514650.15268565659104508No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGCTGTAGGCACCATCAATAGAT508640.1509026180286975No Hit
TTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGCTGTAGGCACCATCA507460.1505525372460735No Hit
CGCCACGCAGTTTTATCCGGTAAAGCGAATGCTGTAGGCACCATCAATAG492350.14606972315671046No Hit
CGGCGGGGCGCGGGACATGTGGCGTACGCTGTAGGCACCATCAATAGATC485990.14418284707409307No Hit
GTTTTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCAATAGATC485850.14414131206598513No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAATTCTGTAGGCACCATCA481600.14288042789128008No Hit
CCTCTAGCATCACCAGTATTAGAGGCCTGTAGGCACCATCAATAGATCGG474690.1408303785625244No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCCTGTAGGCACCATCAATA473760.140554467437236No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGCTGTAGGCACCATCAATAGA465580.1381276362492155No Hit
GCGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGCTGTAGGCACCATCAA453560.13456155912452034No Hit
GCGCCGCGACCGGCTCCGGGACGGCTGGGAAGGCCCCTGTAGGCACCATC443140.13147016780677298No Hit
CGCCACGCAGTTTTATCCGGTAAAGCGAATGATTCTGTAGGCACCATCAA440630.13072550444712366No Hit
ACCTCTAGCATCACCAGTATTAGAGGCTGTAGGCACCATCAATAGATCGG432370.12827493896875578No Hit
TGCAGTTAAAAAGCTCGTAGTTGGATCTTGGCTGTAGGCACCATCAATAG431420.12799309427088051No Hit
AACTTGACCAACGGAACAAGTTACCCTAGGGATAACCTGTAGGCACCATC420930.12488093544907918No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATCTGTAGGCACCATCAA417720.1239285970488902No Hit
ACGCGCGCTACACTGACTGGCTCAGCGCTGTAGGCACCATCAATAGATCG412670.1224303699707113No Hit
CTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGCTGTAGGCACCATCAATA411660.12213072455507551No Hit
TTATACCCACACCCACCCAAGAACAGGGTTTGTTCTGTAGGCACCATCAA409560.12150769943345655No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATAG390420.1158292704678438No Hit
ACGAGACTCTGGCATGCTAACTAGTTACGCGACCCCCTGTAGGCACCATC380860.11299302277133086No Hit
ACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTGCTGTAGGCACCA374440.1110883459709529No Hit
GTCCGGTGCGGAGTGCCCTTCGTCCTGGGACTGTAGGCACCATCAATAGA371400.11018644293775214No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGGACTGTAGGCACCATCAATA370500.109919432171344No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCCTGTAGGCACCATCAATAGATCG369740.10969395641304382No Hit
ACCCTATGGAGCTTTAATTTATTAATGCAAACAGCTGTAGGCACCATCAA363480.10783674819336066No Hit
CGCCACGCAGTTTTATCCGGTAAAGCGAATGATTACTGTAGGCACCATCA353510.10487886225881735No Hit
GCAGTTAAAAAGCTCGTAGTTGGATCTTGCTGTAGGCACCATCAATAGAT344020.10206338206635834No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)